Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   CHF17_RS01015 Genome accession   NZ_CP022537
Coordinates   144623..144805 (+) Length   60 a.a.
NCBI ID   WP_000965649.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 874391     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context


Location: 139623..149805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF17_RS00985 (CHF17_00194) - 140973..141299 (+) 327 WP_000404431.1 DUF1366 domain-containing protein -
  CHF17_RS00990 (CHF17_00195) - 141274..141486 (+) 213 WP_000698337.1 hypothetical protein -
  CHF17_RS00995 (CHF17_00196) - 141499..141801 (+) 303 WP_000215499.1 hypothetical protein -
  CHF17_RS01000 (CHF17_00197) - 141803..142057 (+) 255 WP_000611524.1 phage holin -
  CHF17_RS01005 (CHF17_00199) - 142183..143517 (+) 1335 WP_000257233.1 GH25 family lysozyme -
  CHF17_RS01010 (CHF17_00200) - 143882..144394 (+) 513 WP_000634505.1 PBECR4 domain-containing protein -
  CHF17_RS01015 (CHF17_00201) prx 144623..144805 (+) 183 WP_000965649.1 hypothetical protein Regulator
  CHF17_RS01020 (CHF17_00202) - 145018..145710 (+) 693 WP_000049277.1 histidine phosphatase family protein -
  CHF17_RS01025 (CHF17_00203) - 145707..146459 (+) 753 WP_000739666.1 M15 family metallopeptidase -
  CHF17_RS01030 (CHF17_00204) - 146456..147031 (+) 576 WP_001231504.1 glucosaminidase domain-containing protein -
  CHF17_RS01035 (CHF17_00205) hrcA 147174..148208 (+) 1035 WP_001873813.1 heat-inducible transcriptional repressor HrcA -
  CHF17_RS01040 (CHF17_00206) grpE 148211..148783 (+) 573 WP_001869793.1 nucleotide exchange factor GrpE -

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 7024.13 Da        Isoelectric Point: 4.1954

>NTDB_id=201373 CHF17_RS01015 WP_000965649.1 144623..144805(+) (prx) [Streptococcus agalactiae strain 874391]
MLYIDEFKEAIEKGYISSDTVMVVRKNGKIFDYVLPGEPVRLWEVATEEKVEEVLMELDK

Nucleotide


Download         Length: 183 bp        

>NTDB_id=201373 CHF17_RS01015 WP_000965649.1 144623..144805(+) (prx) [Streptococcus agalactiae strain 874391]
ATGTTATATATAGATGAGTTTAAAGAAGCGATTGAAAAAGGATATATCAGCAGTGATACAGTGATGGTTGTGCGTAAGAA
CGGAAAGATATTTGATTATGTGTTACCTGGTGAGCCTGTAAGATTGTGGGAAGTTGCGACAGAGGAAAAAGTGGAAGAAG
TGTTGATGGAATTAGATAAATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

68.333

100

0.683

  prx Streptococcus pyogenes MGAS315

65

100

0.65

  prx Streptococcus pyogenes MGAS315

65

100

0.65

  prx Streptococcus pyogenes MGAS8232

65

100

0.65

  prx Streptococcus pyogenes MGAS315

82.927

68.333

0.567

  prx Streptococcus pyogenes MGAS315

73.171

68.333

0.5

  prx Streptococcus pyogenes MGAS315

70.732

68.333

0.483


Multiple sequence alignment