Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BKM67_RS08880 Genome accession   NZ_CP017667
Coordinates   1803876..1804370 (-) Length   164 a.a.
NCBI ID   WP_015647334.1    Uniprot ID   A0A0Z8R9G9
Organism   Streptococcus suis strain 1081     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1798876..1809370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM67_RS08865 (BKM67_08685) - 1801697..1802641 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  BKM67_RS08870 (BKM67_08690) - 1802657..1803313 (+) 657 WP_024385182.1 DUF1129 domain-containing protein -
  BKM67_RS08875 (BKM67_08695) rpsR 1803604..1803843 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  BKM67_RS08880 (BKM67_08700) ssbA 1803876..1804370 (-) 495 WP_015647334.1 single-stranded DNA-binding protein Machinery gene
  BKM67_RS08885 (BKM67_08705) rpsF 1804382..1804672 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  BKM67_RS08890 (BKM67_08710) - 1804843..1805832 (-) 990 WP_044768462.1 lipoate--protein ligase -
  BKM67_RS08895 (BKM67_08715) - 1805916..1807355 (-) 1440 WP_105184096.1 6-phospho-beta-glucosidase -
  BKM67_RS08900 (BKM67_08720) - 1807370..1807972 (-) 603 WP_105184095.1 histidine phosphatase family protein -
  BKM67_RS08905 (BKM67_08725) - 1807984..1808583 (-) 600 WP_105184094.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18132.89 Da        Isoelectric Point: 4.7294

>NTDB_id=201373 BKM67_RS08880 WP_015647334.1 1803876..1804370(-) (ssbA) [Streptococcus suis strain 1081]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGTSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=201373 BKM67_RS08880 WP_015647334.1 1803876..1804370(-) (ssbA) [Streptococcus suis strain 1081]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTATAACTCGCCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAACAAGTAATCCAATGGACATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8R9G9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssb Glaesserella parasuis strain SC1401

32.105

100

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366

Multiple sequence alignment