Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   SDD27957_09005 Genome accession   CM001076
Coordinates   1726023..1726202 (-) Length   59 a.a.
NCBI ID   EFY03400.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1721023..1731202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_08975 - 1721931..1722233 (-) 303 EFY03394.1 hypothetical protein -
  SDD27957_08980 - 1722226..1722522 (-) 297 EFY03395.1 hypothetical cytosolic protein -
  SDD27957_08985 nusA 1722538..1723695 (-) 1158 EFY03396.1 transcription elongation factor NusA -
  SDD27957_08990 - 1723838..1724221 (-) 384 EFY03397.1 hypothetical protein -
  SDD27957_08995 - 1724579..1725166 (-) 588 EFY03398.1 ISSdy1, transposase OrfB -
  SDD27957_09000 - 1725395..1725685 (-) 291 EFY03399.1 hypothetical protein -
  SDD27957_09005 prx 1726023..1726202 (-) 180 EFY03400.1 phage protein Regulator
  SDD27957_09010 - 1726441..1727616 (+) 1176 EFY03401.1 deoxyribonuclease precursor -
  SDD27957_09015 - 1727793..1728764 (-) 972 EFY03402.1 putative DNA-binding phage protein -
  SDD27957_09020 - 1729052..1730191 (-) 1140 EFY03403.1 putative N-acetylmuramoyl-L-alanine amidase -
  SDD27957_09025 - 1730169..1730501 (-) 333 EFY03404.1 N-acetylmuramoyl-L-alanine amidase -
  SDD27957_09030 - 1730503..1730832 (-) 330 EFY03405.1 hypothetical protein -

Sequence

Protein


Download         Length: 59 a.a.        Molecular weight: 6696.47 Da        Isoelectric Point: 3.8074

>NTDB_id=20051 SDD27957_09005 EFY03400.1 1726023..1726202(-) (prx) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MLTYDEFKQAIDDGYITGDTVAIVRKNGQIFDYVLPNEEARNGEVVTDEKVEAVLMELE

Nucleotide


Download         Length: 180 bp        

>NTDB_id=20051 SDD27957_09005 EFY03400.1 1726023..1726202(-) (prx) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGCTAACATACGACGAGTTTAAGCAAGCTATTGATGACGGATATATCACAGGAGACACAGTAGCGATCGTGCGCAAAAA
TGGACAGATTTTTGATTATGTGTTGCCGAATGAGGAAGCGAGAAATGGAGAAGTTGTGACAGACGAAAAAGTGGAAGCAG
TGCTGATGGAATTGGAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

88.136

100

0.881
  prx Streptococcus pyogenes MGAS315

84.483

98.305

0.831
  prx Streptococcus pyogenes MGAS8232

82.759

98.305

0.814
  prx Streptococcus pyogenes MGAS315

71.186

100

0.712
  prx Streptococcus pyogenes MGAS315

93.023

72.881

0.678
  prx Streptococcus pyogenes MGAS315

87.805

69.492

0.61
  prx Streptococcus pyogenes MGAS315

76.19

71.186

0.542

Multiple sequence alignment