Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   A4W83_RS08715 Genome accession   NZ_CP017566
Coordinates   1715113..1715673 (-) Length   186 a.a.
NCBI ID   WP_056947508.1    Uniprot ID   A0AAX0VCZ0
Organism   Latilactobacillus sakei strain TMW 1.114     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1710113..1720673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W83_RS08685 (A4W83_08650) rplA 1711348..1712037 (-) 690 WP_004270847.1 50S ribosomal protein L1 -
  A4W83_RS08690 (A4W83_08655) rplK 1712136..1712561 (-) 426 WP_004270859.1 50S ribosomal protein L11 -
  A4W83_RS08695 (A4W83_08660) - 1712687..1713550 (-) 864 WP_251944913.1 alpha/beta fold hydrolase -
  A4W83_RS08700 (A4W83_08665) nusG 1714003..1714551 (-) 549 WP_250824601.1 transcription termination/antitermination protein NusG -
  A4W83_RS08705 (A4W83_08670) secE 1714649..1714828 (-) 180 WP_011375365.1 preprotein translocase subunit SecE -
  A4W83_RS08710 (A4W83_08675) rpmG 1714838..1714987 (-) 150 WP_011375366.1 50S ribosomal protein L33 -
  A4W83_RS08715 (A4W83_08680) sigH 1715113..1715673 (-) 561 WP_056947508.1 sigma-70 family RNA polymerase sigma factor Regulator
  A4W83_RS08720 (A4W83_08685) - 1715751..1716284 (-) 534 WP_251944916.1 NYN domain-containing protein -
  A4W83_RS08725 (A4W83_08690) rlmB 1716288..1717175 (-) 888 WP_082267809.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  A4W83_RS08730 (A4W83_08695) - 1717162..1717569 (-) 408 WP_251944918.1 Mini-ribonuclease 3 -
  A4W83_RS08735 (A4W83_08700) cysS 1717566..1718972 (-) 1407 WP_251944934.1 cysteine--tRNA ligase -
  A4W83_RS08740 (A4W83_08705) - 1719403..1720515 (-) 1113 WP_011375372.1 PIN/TRAM domain-containing protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 22089.28 Da        Isoelectric Point: 7.4752

>NTDB_id=200396 A4W83_RS08715 WP_056947508.1 1715113..1715673(-) (sigH) [Latilactobacillus sakei strain TMW 1.114]
MEQTKRDKMLIAAVAQNDSQALDVLFKAYLPMVYHTVAPYYIRLFDEDDWLQEARIVCYETCQCYDCQKGKSFGSFYKLR
FKNHILNLLRRELAQKRRGDRQAVLIAERPEHDAISEDTMTYYQSQFELRCYLETLSPFELVSFRVLTGQLSIDEACCQL
DCTIDQLKRGQSRCQTKLKRYYQENR

Nucleotide


Download         Length: 561 bp        

>NTDB_id=200396 A4W83_RS08715 WP_056947508.1 1715113..1715673(-) (sigH) [Latilactobacillus sakei strain TMW 1.114]
ATGGAACAAACAAAGCGCGACAAAATGCTGATTGCAGCAGTGGCTCAGAATGATTCACAAGCACTAGATGTATTATTCAA
GGCGTATTTGCCGATGGTGTATCACACCGTGGCGCCATATTATATCCGGTTATTCGATGAAGACGATTGGTTACAAGAAG
CCCGGATTGTTTGTTACGAAACTTGCCAATGTTACGATTGTCAAAAAGGCAAAAGTTTTGGGAGTTTCTATAAATTACGG
TTTAAAAACCACATTTTAAATTTACTACGACGAGAACTCGCACAAAAACGGCGAGGTGATCGTCAGGCAGTATTGATTGC
GGAGCGACCGGAACACGACGCGATTTCAGAAGATACGATGACTTACTATCAATCGCAGTTTGAATTGCGATGTTATCTTG
AAACGCTGTCGCCTTTTGAATTAGTGTCGTTTCGGGTGCTGACCGGGCAGCTTTCAATTGATGAAGCTTGTTGCCAACTC
GATTGTACGATTGATCAGTTGAAACGGGGCCAATCAAGGTGTCAGACTAAGTTAAAACGGTATTATCAAGAGAATCGTTA
A

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

96.774

100

0.968

Multiple sequence alignment