Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   SDD27957_00750 Genome accession   CM001076
Coordinates   141668..142108 (+) Length   146 a.a.
NCBI ID   EFY01844.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 136668..147108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_00720 - 138349..138714 (+) 366 EFY01838.1 Putative DNA binding protein -
  SDD27957_00725 comGA 138795..139736 (+) 942 EFY01839.1 putative ABC transporter subunit ComYA Machinery gene
  SDD27957_00730 comGB 139672..140703 (+) 1032 EFY01840.1 putative competence protein Machinery gene
  SDD27957_00735 comGC 140705..141031 (+) 327 EFY01841.1 putative competence protein Machinery gene
  SDD27957_00740 comGD 141006..141434 (+) 429 EFY01842.1 putative competence protein Machinery gene
  SDD27957_00745 comGE 141442..141687 (+) 246 EFY01843.1 hypothetical protein Machinery gene
  SDD27957_00750 comGF 141668..142108 (+) 441 EFY01844.1 comG operon protein 6 Machinery gene
  SDD27957_00755 - 142086..142460 (+) 375 EFY01845.1 hypothetical protein -
  SDD27957_00760 comGH 142523..143476 (+) 954 EFY01846.1 adenine-specific methyltransferase Machinery gene
  SDD27957_00765 - 143535..144731 (+) 1197 EFY01847.1 acetate kinase -
  SDD27957_00770 - 145041..145247 (+) 207 EFY01848.1 DNA-binding protein -
  SDD27957_00775 - 145530..146006 (+) 477 EFY01849.1 CAAX amino terminal protease family membrane protein -
  SDD27957_00780 - 146024..146461 (+) 438 EFY01850.1 membrane protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 17006.57 Da        Isoelectric Point: 10.5665

>NTDB_id=20018 SDD27957_00750 EFY01844.1 141668..142108(+) (comGF) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MKKRTGRVQAFTFLEALIALLVISGSLLVYQGLTKTLLSHSRYLTNHDQDHWLLFSQQLREELSGVRFHKVENNKLYIEK
GKKKLVLGQFKSHDFRKSAGNGQGYQPMLFGLSHSHIQAEQSRIRITLHWKSGLERTFYYAFQDQP

Nucleotide


Download         Length: 441 bp        

>NTDB_id=20018 SDD27957_00750 EFY01844.1 141668..142108(+) (comGF) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
TTGAAAAAAAGGACAGGTAGGGTCCAAGCATTTACTTTTTTAGAAGCTTTGATTGCCTTGCTGGTGATATCAGGTTCTCT
TCTAGTGTATCAAGGGTTGACCAAAACACTCCTTAGCCACAGTCGCTACCTTACCAACCATGATCAAGACCATTGGCTTT
TATTCTCCCAGCAGCTACGAGAAGAGTTAAGTGGAGTGCGATTTCACAAAGTAGAAAACAATAAATTATATATTGAAAAA
GGCAAGAAAAAACTAGTTTTAGGACAATTTAAAAGCCATGACTTTCGAAAATCGGCAGGCAATGGACAAGGTTATCAACC
CATGCTGTTTGGTCTGTCTCATAGTCATATACAAGCAGAACAGTCTCGTATTCGTATTACCCTTCACTGGAAAAGTGGAC
TAGAAAGGACCTTCTACTATGCGTTTCAAGACCAACCTTAA

Domains

Predicted by InterProScan.

Putative Competence protein ComGF (ComGF)

(40-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Streptococcus mutans UA159

47.482

95.205

0.452
  comGF Streptococcus mutans UA140

46.763

95.205

0.445
  comGF Lactococcus lactis subsp. cremoris KW2

46.377

94.521

0.438
  comGF/cglF Streptococcus pneumoniae D39

43.796

93.836

0.411
  comGF/cglF Streptococcus mitis SK321

43.796

93.836

0.411
  comGF/cglF Streptococcus pneumoniae TIGR4

43.796

93.836

0.411
  comGF/cglF Streptococcus pneumoniae R6

43.796

93.836

0.411
  comGF/cglF Streptococcus mitis NCTC 12261

43.796

93.836

0.411
  comGF/cglF Streptococcus pneumoniae Rx1

43.796

93.836

0.411

Multiple sequence alignment