Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   BI283_RS06625 Genome accession   NZ_CP017430
Coordinates   1404705..1405034 (+) Length   109 a.a.
NCBI ID   WP_002481038.1    Uniprot ID   -
Organism   Staphylococcus simulans strain MR4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1399705..1410034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI283_RS06595 (BI283_06560) - 1400473..1400673 (+) 201 WP_002481044.1 YqgQ family protein -
  BI283_RS06600 (BI283_06565) - 1400673..1401659 (+) 987 WP_002481043.1 ROK family glucokinase -
  BI283_RS06605 (BI283_06570) - 1401659..1401988 (+) 330 WP_105966587.1 MTH1187 family thiamine-binding protein -
  BI283_RS06610 (BI283_06575) - 1401988..1402611 (+) 624 WP_057510470.1 MBL fold metallo-hydrolase -
  BI283_RS06615 (BI283_06580) comGA 1402668..1403642 (+) 975 WP_105966585.1 competence type IV pilus ATPase ComGA Machinery gene
  BI283_RS06620 (BI283_06585) comGB 1403614..1404687 (+) 1074 WP_105977709.1 competence type IV pilus assembly protein ComGB -
  BI283_RS06625 (BI283_06590) comGC 1404705..1405034 (+) 330 WP_002481038.1 competence type IV pilus major pilin ComGC Machinery gene
  BI283_RS06630 (BI283_06595) - 1405037..1405390 (+) 354 WP_257790907.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  BI283_RS14135 - 1405446..1405766 (+) 321 WP_103364375.1 hypothetical protein -
  BI283_RS14140 (BI283_06600) - 1405819..1406175 (+) 357 WP_256324336.1 competence type IV pilus minor pilin ComGF -
  BI283_RS06645 (BI283_06610) - 1406340..1406879 (+) 540 WP_002481034.1 shikimate kinase -
  BI283_RS06650 (BI283_06615) gcvT 1407058..1408152 (+) 1095 WP_023015155.1 glycine cleavage system aminomethyltransferase GcvT -
  BI283_RS06655 (BI283_06620) gcvPA 1408174..1409523 (+) 1350 WP_057510473.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12084.23 Da        Isoelectric Point: 9.6828

>NTDB_id=198067 BI283_RS06625 WP_002481038.1 1404705..1405034(+) (comGC) [Staphylococcus simulans strain MR4]
MKNLVKNLKHKYLRAFTLLEMLLVLLVISVLLILIIPNIAKQSKHVQDTGCEAQQKMVNSQIEAFTLNKNRAPSSIDELV
SEGFLKEGQKTCKSGKTITISDGEATVSQ

Nucleotide


Download         Length: 330 bp        

>NTDB_id=198067 BI283_RS06625 WP_002481038.1 1404705..1405034(+) (comGC) [Staphylococcus simulans strain MR4]
ATGAAAAACCTTGTCAAAAACTTAAAACATAAATATTTACGAGCATTTACTTTACTAGAAATGCTTTTAGTTCTTTTAGT
TATCAGTGTTTTATTGATACTCATTATTCCAAATATCGCTAAACAATCTAAGCATGTTCAAGATACTGGGTGTGAAGCAC
AACAAAAAATGGTGAATAGCCAAATAGAAGCTTTTACTCTAAATAAAAATAGAGCGCCTTCTTCAATCGATGAATTAGTT
AGTGAAGGATTTTTAAAAGAAGGTCAAAAAACATGTAAATCTGGAAAAACGATTACAATCAGCGACGGCGAAGCTACCGT
TAGTCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

72.632

87.156

0.633
  comGC Staphylococcus aureus MW2

72.632

87.156

0.633
  comGC/cglC Streptococcus pneumoniae TIGR4

41.905

96.33

0.404
  comGC Bacillus subtilis subsp. subtilis str. 168

42.708

88.073

0.376
  comGC/cglC Streptococcus mitis SK321

46.067

81.651

0.376
  comGC/cglC Streptococcus mitis NCTC 12261

46.067

81.651

0.376
  comGC/cglC Streptococcus pneumoniae D39

44.944

81.651

0.367
  comGC/cglC Streptococcus pneumoniae Rx1

44.944

81.651

0.367
  comGC/cglC Streptococcus pneumoniae R6

44.944

81.651

0.367

Multiple sequence alignment