Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | A4W87_RS03155 | Genome accession | NZ_CP017273 |
| Coordinates | 624929..625936 (+) | Length | 335 a.a. |
| NCBI ID | WP_076632061.1 | Uniprot ID | A0AAX0VC18 |
| Organism | Latilactobacillus sakei strain TMW 1.1396 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 619929..630936
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4W87_RS03125 (A4W87_03090) | - | 620535..621935 (+) | 1401 | WP_076632055.1 | hypothetical protein | - |
| A4W87_RS03135 (A4W87_03100) | - | 622122..622511 (-) | 390 | WP_076632056.1 | hypothetical protein | - |
| A4W87_RS03140 (A4W87_03105) | - | 622608..623108 (+) | 501 | WP_076632058.1 | VanZ family protein | - |
| A4W87_RS03145 (A4W87_03110) | - | 623199..623930 (+) | 732 | WP_076632059.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| A4W87_RS03150 (A4W87_03115) | comGA | 624046..624936 (+) | 891 | WP_076632060.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| A4W87_RS03155 (A4W87_03120) | comGB | 624929..625936 (+) | 1008 | WP_076632061.1 | type II secretion system F family protein | Machinery gene |
| A4W87_RS03160 (A4W87_03125) | comGC | 625933..626232 (+) | 300 | WP_076632062.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| A4W87_RS03165 (A4W87_03130) | comGD | 626204..626656 (+) | 453 | WP_076632063.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| A4W87_RS03170 (A4W87_03135) | comGE | 626643..626948 (+) | 306 | WP_025016385.1 | hypothetical protein | Machinery gene |
| A4W87_RS03175 (A4W87_03140) | comGF | 626923..627435 (+) | 513 | WP_041820873.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| A4W87_RS03180 (A4W87_03145) | - | 627503..627736 (+) | 234 | WP_157779300.1 | hypothetical protein | - |
| A4W87_RS03185 (A4W87_03150) | - | 627860..628870 (+) | 1011 | WP_011374994.1 | class I SAM-dependent methyltransferase | - |
| A4W87_RS03190 (A4W87_03155) | - | 628892..630088 (+) | 1197 | WP_011374993.1 | acetate kinase | - |
| A4W87_RS03195 (A4W87_03160) | - | 630143..630601 (+) | 459 | WP_011374992.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 38511.46 Da Isoelectric Point: 9.3969
>NTDB_id=197215 A4W87_RS03155 WP_076632061.1 624929..625936(+) (comGB) [Latilactobacillus sakei strain TMW 1.1396]
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVDFPTDYVGQIELTE
LQGNLGQCLWHLGQIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLNRIILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGFIIICTY
LSILLPLYQTMEGIS
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVDFPTDYVGQIELTE
LQGNLGQCLWHLGQIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLNRIILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGFIIICTY
LSILLPLYQTMEGIS
Nucleotide
Download Length: 1008 bp
>NTDB_id=197215 A4W87_RS03155 WP_076632061.1 624929..625936(+) (comGB) [Latilactobacillus sakei strain TMW 1.1396]
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGTTTTTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGTTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGTCAGATTCAAAGTATCCGCCAAAAACGCCGCCGAGAAATACG
TGGGGTACTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGGGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAATCGCATCATATTGTGGGGTTTTTTGTTAGTG
CTAGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGACTCAAGTTAACGGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTAACCTTGGTAGCGCAA
TTAGAGGTTGTACTCGCTTCGGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTGGCTAAGCATAATCTTACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGTAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGTTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGTTTTTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGTTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGTCAGATTCAAAGTATCCGCCAAAAACGCCGCCGAGAAATACG
TGGGGTACTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGGGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAATCGCATCATATTGTGGGGTTTTTTGTTAGTG
CTAGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGACTCAAGTTAACGGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTAACCTTGGTAGCGCAA
TTAGAGGTTGTACTCGCTTCGGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTGGCTAAGCATAATCTTACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGTAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGTTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Latilactobacillus sakei subsp. sakei 23K |
98.806 |
100 |
0.988 |