Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   BFO62_RS04840 Genome accession   NZ_CP017257
Coordinates   831637..832257 (+) Length   206 a.a.
NCBI ID   WP_061725124.1    Uniprot ID   -
Organism   Neisseria meningitidis strain COL-201504-11     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 826637..837257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFO62_RS04810 (BFO62_04370) - 826772..827104 (+) 333 WP_002213854.1 hypothetical protein -
  BFO62_RS04815 (BFO62_04375) - 827435..827944 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  BFO62_RS04820 (BFO62_04380) - 828472..829059 (-) 588 WP_002220670.1 superoxide dismutase -
  BFO62_RS04830 (BFO62_04385) dnaB 829221..830627 (+) 1407 WP_002213843.1 replicative DNA helicase -
  BFO62_RS04835 (BFO62_04390) pilH 830936..831613 (+) 678 WP_061701871.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  BFO62_RS04840 (BFO62_04395) pilV 831637..832257 (+) 621 WP_061725124.1 type IV pilus modification protein PilV Machinery gene
  BFO62_RS04845 (BFO62_04400) pilJ 832254..833192 (+) 939 WP_076612512.1 PilW family protein Machinery gene
  BFO62_RS04850 (BFO62_04405) pilK 833171..833770 (+) 600 WP_076612511.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BFO62_RS04855 (BFO62_04410) pilX 833775..834248 (+) 474 WP_002247808.1 PilX family type IV pilin Machinery gene
  BFO62_RS04875 (BFO62_04415) - 835996..836424 (-) 429 Protein_824 AzlC family ABC transporter permease -
  BFO62_RS04880 (BFO62_04420) dut 836567..837019 (+) 453 WP_002220679.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22314.20 Da        Isoelectric Point: 4.8009

>NTDB_id=196998 BFO62_RS04840 WP_061725124.1 831637..832257(+) (pilV) [Neisseria meningitidis strain COL-201504-11]
MKNNDCFRLKDSQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMGNHTLPHTLSAVDGDFAIDAMKTKGQLAEAQLKRFSYELKNALPDAAAIHYTVCKDSSGNAPTLSGSTFSQNCDG
SANGDTLIKVLWVNDSAGDSDIARTNLETNGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 621 bp        

>NTDB_id=196998 BFO62_RS04840 WP_061725124.1 831637..832257(+) (pilV) [Neisseria meningitidis strain COL-201504-11]
ATGAAGAATAATGATTGCTTCCGCCTGAAAGATTCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCACTATTGTCTGTTCAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCAGAGACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGGGAAACCATACACTACCGCATACACTATCAGCTGTGGATGGCGATTTTGCGATTGATGCCATGAA
AACTAAGGGGCAATTGGCAGAGGCACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGCAGCCA
TCCATTACACCGTCTGCAAGGATTCGTCGGGTAATGCGCCGACATTGTCCGGCAGTACTTTTTCTCAAAATTGCGATGGT
AGTGCAAATGGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATCGCCCGTACGAATCT
TGAGACGAACGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGGGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

94.175

100

0.942
  pilI Neisseria gonorrhoeae MS11

80.583

100

0.806
  pilV Neisseria gonorrhoeae MS11

80.583

100

0.806

Multiple sequence alignment