Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   CDH85_RS10180 Genome accession   NZ_CP021769
Coordinates   1941309..1941497 (-) Length   62 a.a.
NCBI ID   WP_000027835.1    Uniprot ID   Q8E0V0
Organism   Streptococcus agalactiae strain B509     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1936309..1946497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH85_RS10165 (CDH85_10065) gyrB 1937047..1938999 (-) 1953 WP_000134196.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  CDH85_RS10170 (CDH85_10070) - 1939000..1939560 (-) 561 WP_001106189.1 HAD-IA family hydrolase -
  CDH85_RS10175 (CDH85_10075) - 1939679..1940884 (-) 1206 WP_000078931.1 FtsW/RodA/SpoVE family cell cycle protein -
  CDH85_RS10180 (CDH85_10080) prx 1941309..1941497 (-) 189 WP_000027835.1 hypothetical protein Regulator
  CDH85_RS10185 (CDH85_10085) - 1941539..1941739 (-) 201 WP_000076708.1 CsbD family protein -
  CDH85_RS10190 (CDH85_10090) - 1941917..1942564 (+) 648 Protein_1874 IS3 family transposase -
  CDH85_RS10195 (CDH85_10095) - 1942616..1943935 (-) 1320 WP_000734169.1 HAMP domain-containing sensor histidine kinase -
  CDH85_RS10200 (CDH85_10100) - 1943932..1944585 (-) 654 WP_000699093.1 response regulator transcription factor -
  CDH85_RS10205 (CDH85_10105) - 1944682..1946058 (-) 1377 WP_000594351.1 FtsX-like permease family protein -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7180.25 Da        Isoelectric Point: 4.7815

>NTDB_id=195849 CDH85_RS10180 WP_000027835.1 1941309..1941497(-) (prx) [Streptococcus agalactiae strain B509]
MSIRTDIDEFKEAIDKGYISGNTVAIVRKNGKIFDYVLLHEEVREEEVVTVERVLDVLRKLS

Nucleotide


Download         Length: 189 bp        

>NTDB_id=195849 CDH85_RS10180 WP_000027835.1 1941309..1941497(-) (prx) [Streptococcus agalactiae strain B509]
TTGTCTATCAGAACAGATATAGATGAGTTTAAAGAAGCGATTGATAAAGGCTATATTTCAGGGAACACAGTAGCGATAGT
GCGTAAAAACGGAAAGATATTTGATTATGTGTTACTACACGAAGAAGTGAGAGAAGAAGAGGTTGTTACAGTTGAGAGAG
TGCTTGATGTACTGAGGAAGTTATCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8E0V0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

72.222

87.097

0.629
  prx Streptococcus pyogenes MGAS8232

69.091

88.71

0.613
  prx Streptococcus pyogenes MGAS315

66.667

87.097

0.581
  prx Streptococcus pyogenes MGAS315

85

64.516

0.548
  prx Streptococcus pyogenes MGAS315

61.818

88.71

0.548
  prx Streptococcus pyogenes MGAS315

74.359

62.903

0.468
  prx Streptococcus pyogenes MGAS315

78.378

59.677

0.468