Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   BFM96_RS05290 Genome accession   NZ_CP016953
Coordinates   1109087..1109677 (+) Length   196 a.a.
NCBI ID   WP_068991285.1    Uniprot ID   A0A917A5Y4
Organism   Streptococcus himalayensis strain HTS2     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1109712..1110968 1109087..1109677 flank 35


Gene organization within MGE regions


Location: 1109087..1110968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFM96_RS05290 clpP 1109087..1109677 (+) 591 WP_068991285.1 ATP-dependent Clp protease proteolytic subunit Regulator
  BFM96_RS05295 - 1109712..1110968 (-) 1257 WP_068989905.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21638.76 Da        Isoelectric Point: 5.0281

>NTDB_id=194039 BFM96_RS05290 WP_068991285.1 1109087..1109677(+) (clpP) [Streptococcus himalayensis strain HTS2]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLERILAENSGK
TVKQVHKDAERDYWMSAQETLEYGFIDEIMENNHLK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=194039 BFM96_RS05290 WP_068991285.1 1109087..1109677(+) (clpP) [Streptococcus himalayensis strain HTS2]
ATGATTCCAGTAGTTATTGAACAAACCAGTCGTGGAGAACGTTCCTATGACATTTACTCTCGCCTATTGAAAGACCGCAT
TATCATGTTGACGGGTCCTGTTGAGGACAATATGGCTAATTCTGTTATCGCGCAATTGCTCTTTTTGGATGCACAAGATA
GCACGAAAGATATTTATTTGTACGTAAATACTCCAGGAGGTTCTGTTTCAGCAGGACTTGCGATTGTGGATACGATGAAT
TTCATCAAAGCGGATGTCCAAACGATTGTAATGGGGATGGCAGCTAGCATGGGAACGGTTATCGCTTCAAGTGGTACCAA
GGGGAAACGTTTCATGTTGCCAAATGCGGAATACATGATTCACCAACCAATGGGCGGTACCGGTGGCGGCACGCAGCAAA
CGGATATGGCTATTGCAGCAGAACACTTGCTCAAAACTAGAAATAACCTTGAAAGAATCTTGGCAGAAAATTCTGGAAAG
ACCGTGAAACAAGTCCATAAGGATGCCGAACGGGATTACTGGATGAGTGCCCAAGAAACCTTGGAATATGGTTTCATTGA
TGAAATCATGGAAAATAATCACTTGAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes JRS4

94.388

100

0.944
  clpP Streptococcus pyogenes MGAS315

94.388

100

0.944
  clpP Streptococcus pneumoniae D39

93.846

99.49

0.934
  clpP Streptococcus pneumoniae R6

93.846

99.49

0.934
  clpP Streptococcus pneumoniae TIGR4

93.846

99.49

0.934
  clpP Streptococcus pneumoniae Rx1

93.846

99.49

0.934
  clpP Streptococcus thermophilus LMD-9

91.837

100

0.918
  clpP Streptococcus thermophilus LMG 18311

91.837

100

0.918
  clpP Streptococcus mutans UA159

88.776

100

0.888
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

85.714

100

0.857
  clpP Lactococcus lactis subsp. cremoris KW2

85.204

100

0.852
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571
  clpP Bacillus subtilis subsp. subtilis str. 168

57.368

96.939

0.556

Multiple sequence alignment