Detailed information NTG0193785

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: D083_RS08095
• Genome accession: NZ_CP016928
• Coordinates: 1864781..1865332 (+)
• Length: 183 a.a.
• NCBI ID: WP_022634792.1
• Uniprot ID: -
• Organism: Dickeya solani RNS 08.23.3.1.A
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1864781..1878841	1864781..1865332	within	0

Gene organization within MGE regions

Location: 1864781..1878841

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D083_RS08095 (D083_1711)	ssb	1864781..1865332 (+)	552	WP_022634792.1	single-stranded DNA-binding protein	Machinery gene
D083_RS08105 (D083_1712)	-	1865617..1865802 (-)	186	WP_022634794.1	hypothetical protein	-
D083_RS08110 (D083_1713)	-	1865981..1866469 (+)	489	WP_022634795.1	hypothetical protein	-
D083_RS08115 (D083_1714)	-	1866732..1867304 (+)	573	WP_022634796.1	DUF4255 domain-containing protein	-
D083_RS08120 (D083_1715)	-	1867310..1868107 (+)	798	WP_022634797.1	hypothetical protein	-
D083_RS08125 (D083_1716)	-	1868252..1869805 (+)	1554	WP_022634798.1	phage tail sheath family protein	-
D083_RS08130 (D083_1717)	-	1869857..1870327 (+)	471	WP_022634799.1	phage tail protein	-
D083_RS08135 (D083_1718)	-	1870414..1870872 (+)	459	WP_023637986.1	phage tail protein	-
D083_RS08140 (D083_1719)	-	1870893..1871075 (+)	183	WP_022634801.1	hypothetical protein	-
D083_RS08145 (D083_1720)	-	1871091..1871738 (+)	648	WP_022634802.1	hypothetical protein	-
D083_RS08150 (D083_1721)	vgrG	1871750..1873540 (+)	1791	WP_022634803.1	type VI secretion system tip protein VgrG	-
D083_RS08160 (D083_1722)	-	1873999..1874298 (+)	300	WP_022634804.1	PAAR domain-containing protein	-
D083_RS08165 (D083_1723)	-	1874301..1874720 (+)	420	WP_022634805.1	GPW/gp25 family protein	-
D083_RS08170 (D083_1724)	-	1874717..1878841 (+)	4125	WP_022634806.1	baseplate J/gp47 family protein	-

Sequence

Protein

• Length: 183 a.a.
• Molecular weight: 19717.72 Da
• Isoelectric Point: 4.9658

>NTDB_id=193785 D083_RS08095 WP_022634792.1 1864781..1865332(+) (ssb) [Dickeya solani RNS 08.23.3.1.A]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGGMGNNAGGNPQQGGWGQPQQPQQENQFSGGGQPQS
RPQQSAPMPGNEPPMDFDDDIPF

Nucleotide

• Length: 552 bp

>NTDB_id=193785 D083_RS08095 WP_022634792.1 1864781..1865332(+) (ssb) [Dickeya solani RNS 08.23.3.1.A]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAACGCACCG
AGTGGCACCGCGTCGCGCTGTACGGCAAGCTGGCGGAAATCGCCGGTGAATACCTGCGCAAAGGCTCTCAGGTATATATC
GAAGGCCAGCTGCGCACCCGCAAATGGCAGGACCAGGGCGGCCAGGACCGCTACACCACCGAAGTGGTAGTCGATATCTC
CGGCAGCATGCAGATGCTGGGCGGCCGCACAGGCGGCGGCGCTCCGGCCGGTGGCGGCATGGGCAACAATGCGGGCGGCA
ATCCGCAGCAAGGCGGTTGGGGTCAGCCGCAACAGCCGCAGCAAGAGAACCAGTTCAGCGGCGGCGGTCAGCCCCAGTCC
CGTCCGCAGCAAAGCGCGCCGATGCCGGGCAACGAGCCGCCGATGGATTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	74.054	100	0.749
ssb	Glaesserella parasuis strain SC1401	54.645	100	0.546
ssb	Neisseria meningitidis MC58	45.503	100	0.47
ssb	Neisseria gonorrhoeae MS11	45.503	100	0.47