Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   BEN15_RS12135 Genome accession   NZ_CP016877
Coordinates   959117..959230 (+) Length   37 a.a.
NCBI ID   WP_418346456.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain KLDS 3.1003     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 955873..970478 959117..959230 within 0
IScluster/Tn 953614..961346 959117..959230 within 0


Gene organization within MGE regions


Location: 953614..970478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN15_RS05135 (BEN15_05135) - 953621..954870 (-) 1250 Protein_929 ISL3 family transposase -
  BEN15_RS05140 (BEN15_05140) - 954999..955481 (-) 483 WP_002885585.1 S-ribosylhomocysteine lyase -
  BEN15_RS05145 (BEN15_05145) - 955873..956826 (+) 954 WP_065972448.1 IS30 family transposase -
  BEN15_RS05150 (BEN15_05150) - 956847..957182 (+) 336 Protein_932 restriction endonuclease subunit S -
  BEN15_RS05155 (BEN15_05155) - 957610..958095 (+) 486 WP_065972943.1 NUDIX hydrolase -
  BEN15_RS05160 (BEN15_05160) - 958099..958538 (+) 440 Protein_934 ASCH domain-containing protein -
  BEN15_RS12135 prx 959117..959230 (+) 114 WP_418346456.1 hypothetical protein Regulator
  BEN15_RS12140 - 959642..959806 (-) 165 Protein_936 site-specific integrase -
  BEN15_RS05170 (BEN15_05170) - 959964..960161 (-) 198 WP_065972945.1 hypothetical protein -
  BEN15_RS05175 (BEN15_05175) - 960393..961346 (+) 954 WP_065972448.1 IS30 family transposase -
  BEN15_RS11640 - 961482..961820 (-) 339 Protein_939 CD20-like domain-containing protein -
  BEN15_RS05185 (BEN15_05185) - 961911..962276 (-) 366 WP_065972947.1 ImmA/IrrE family metallo-endopeptidase -
  BEN15_RS05190 (BEN15_05190) - 962282..962629 (-) 348 WP_065972948.1 helix-turn-helix domain-containing protein -
  BEN15_RS05195 (BEN15_05195) - 962931..963140 (+) 210 WP_065972949.1 helix-turn-helix domain-containing protein -
  BEN15_RS05200 (BEN15_05200) - 963346..964725 (+) 1380 WP_065972950.1 glutamate decarboxylase -
  BEN15_RS05205 (BEN15_05205) - 964762..966195 (+) 1434 WP_082308128.1 amino acid permease -
  BEN15_RS05210 (BEN15_05210) - 966375..966923 (-) 549 WP_082308129.1 Tn3 family transposase -
  BEN15_RS05215 (BEN15_05215) - 966947..967627 (+) 681 Protein_946 IS6 family transposase -
  BEN15_RS05220 (BEN15_05220) - 968042..969649 (+) 1608 WP_014608011.1 ribonuclease Y -

Sequence

Protein


Download         Length: 37 a.a.        Molecular weight: 4298.90 Da        Isoelectric Point: 4.8669

>NTDB_id=193331 BEN15_RS12135 WP_418346456.1 959117..959230(+) (prx) [Streptococcus thermophilus strain KLDS 3.1003]
MTYDEVMEAIEKGFIRGDKISIVRRNGKIHDYVLDGE

Nucleotide


Download         Length: 114 bp        

>NTDB_id=193331 BEN15_RS12135 WP_418346456.1 959117..959230(+) (prx) [Streptococcus thermophilus strain KLDS 3.1003]
ATGACATATGATGAAGTAATGGAAGCGATAGAAAAAGGGTTTATCAGGGGGGATAAAATCAGTATTGTCCGACGAAATGG
GAAGATCCATGACTACGTTTTAGACGGTGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

64.706

91.892

0.595
  prx Streptococcus pyogenes MGAS315

59.459

100

0.595
  prx Streptococcus pyogenes MGAS315

56.757

100

0.568
  prx Streptococcus pyogenes MGAS315

54.054

100

0.541
  prx Streptococcus pyogenes MGAS8232

54.054

100

0.541
  prx Streptococcus pyogenes MGAS315

54.054

100

0.541
  prx Streptococcus pyogenes MGAS315

54.054

100

0.541

Multiple sequence alignment