Detailed information
Bioinformatically predicted
Overview
| Name | clpP | Type | Regulator |
| Locus tag | BEN31_RS18680 | Genome accession | NZ_CP016784 |
| Coordinates | 3690718..3691314 (-) | Length | 198 a.a. |
| NCBI ID | WP_034660066.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain PDSLzg-1 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3685718..3696314
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BEN31_RS18655 (BEN31_18655) | - | 3685801..3686778 (-) | 978 | WP_060597351.1 | 2-hydroxyacid dehydrogenase | - |
| BEN31_RS18660 (BEN31_18660) | - | 3687332..3687913 (+) | 582 | WP_060597724.1 | beta-class carbonic anhydrase | - |
| BEN31_RS18665 (BEN31_18665) | - | 3687951..3689573 (+) | 1623 | WP_060597350.1 | SulP family inorganic anion transporter | - |
| BEN31_RS18670 (BEN31_18670) | - | 3689602..3689943 (-) | 342 | WP_034660068.1 | MazG nucleotide pyrophosphohydrolase domain-containing protein | - |
| BEN31_RS18675 (BEN31_18675) | - | 3690080..3690658 (+) | 579 | WP_034660067.1 | TIGR00730 family Rossman fold protein | - |
| BEN31_RS18680 (BEN31_18680) | clpP | 3690718..3691314 (-) | 597 | WP_034660066.1 | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | Regulator |
| BEN31_RS18690 (BEN31_18690) | - | 3691826..3692812 (+) | 987 | WP_081311477.1 | tyrosine-type recombinase/integrase | - |
| BEN31_RS18695 (BEN31_18695) | - | 3692942..3693868 (+) | 927 | WP_066031707.1 | hypothetical protein | - |
| BEN31_RS18700 (BEN31_18700) | - | 3693865..3694242 (+) | 378 | WP_066031708.1 | helix-turn-helix domain-containing protein | - |
| BEN31_RS18705 (BEN31_18705) | - | 3694445..3694933 (+) | 489 | WP_066031709.1 | hypothetical protein | - |
| BEN31_RS18710 (BEN31_18710) | - | 3694936..3695271 (+) | 336 | WP_066031710.1 | hypothetical protein | - |
| BEN31_RS18715 (BEN31_18715) | - | 3695295..3695573 (+) | 279 | WP_066031711.1 | hypothetical protein | - |
| BEN31_RS18720 (BEN31_18720) | - | 3695575..3695919 (+) | 345 | WP_066031712.1 | hypothetical protein | - |
| BEN31_RS18725 (BEN31_18725) | - | 3695919..3696197 (+) | 279 | WP_066031713.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 198 a.a. Molecular weight: 21832.99 Da Isoelectric Point: 4.6141
>NTDB_id=192214 BEN31_RS18680 WP_034660066.1 3690718..3691314(-) (clpP) [Bacillus pumilus strain PDSLzg-1]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALEYGLIDKVLTRNSEEQK
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALEYGLIDKVLTRNSEEQK
Nucleotide
Download Length: 597 bp
>NTDB_id=192214 BEN31_RS18680 WP_034660066.1 3690718..3691314(-) (clpP) [Bacillus pumilus strain PDSLzg-1]
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG
AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCGATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACCATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCCCTTCCAAACAGTGAAGTCATGATTCACCAACCACTAGGTGGTGCCCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG
CCAATTGAAGTGATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTGAATACGGACTCATTGA
CAAAGTCTTGACCCGTAATTCAGAAGAACAAAAATAA
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG
AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCGATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACCATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCCCTTCCAAACAGTGAAGTCATGATTCACCAACCACTAGGTGGTGCCCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG
CCAATTGAAGTGATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTGAATACGGACTCATTGA
CAAAGTCTTGACCCGTAATTCAGAAGAACAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpP | Bacillus subtilis subsp. subtilis str. 168 |
92.893 |
99.495 |
0.924 |
| clpP | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
68.063 |
96.465 |
0.657 |
| clpP | Streptococcus thermophilus LMG 18311 |
59.067 |
97.475 |
0.576 |
| clpP | Streptococcus thermophilus LMD-9 |
59.067 |
97.475 |
0.576 |
| clpP | Lactococcus lactis subsp. cremoris KW2 |
57.216 |
97.98 |
0.561 |
| clpP | Streptococcus pneumoniae D39 |
56.701 |
97.98 |
0.556 |
| clpP | Streptococcus pneumoniae Rx1 |
56.701 |
97.98 |
0.556 |
| clpP | Streptococcus pneumoniae R6 |
56.701 |
97.98 |
0.556 |
| clpP | Streptococcus pneumoniae TIGR4 |
56.701 |
97.98 |
0.556 |
| clpP | Lactococcus lactis subsp. lactis strain DGCC12653 |
55.155 |
97.98 |
0.54 |
| clpP | Streptococcus pyogenes JRS4 |
55.44 |
97.475 |
0.54 |
| clpP | Streptococcus pyogenes MGAS315 |
55.44 |
97.475 |
0.54 |
| clpP | Streptococcus mutans UA159 |
54.639 |
97.98 |
0.535 |