Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | A6B39_RS00970 | Genome accession | NZ_CP016606 |
| Coordinates | 169908..170252 (-) | Length | 114 a.a. |
| NCBI ID | WP_176669352.1 | Uniprot ID | - |
| Organism | Mannheimia granulomatis strain BJ1680.3 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 164908..175252
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6B39_RS00955 (A6B39_00915) | manX | 165143..166120 (-) | 978 | WP_176669349.1 | PTS mannose transporter subunit IIAB | - |
| A6B39_RS00960 (A6B39_00920) | gshAB | 166410..168686 (-) | 2277 | WP_176669350.1 | bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB | - |
| A6B39_RS00965 (A6B39_00925) | asd | 168853..169743 (-) | 891 | WP_176669351.1 | archaetidylserine decarboxylase | - |
| A6B39_RS00970 (A6B39_00930) | comEA/comE1 | 169908..170252 (-) | 345 | WP_176669352.1 | ComEA family DNA-binding protein | Machinery gene |
| A6B39_RS00975 (A6B39_00935) | - | 170549..171859 (+) | 1311 | WP_176669353.1 | LysM-like peptidoglycan-binding domain-containing protein | - |
| A6B39_RS00980 (A6B39_00940) | - | 171916..172332 (+) | 417 | WP_176669354.1 | MliC family protein | - |
| A6B39_RS00985 (A6B39_00945) | waaF | 172364..173401 (+) | 1038 | WP_176669355.1 | lipopolysaccharide heptosyltransferase II | - |
| A6B39_RS00990 (A6B39_00950) | rfaC | 173468..174427 (+) | 960 | WP_176669356.1 | lipopolysaccharide heptosyltransferase RfaC | - |
| A6B39_RS00995 (A6B39_00955) | rpsL | 174547..174921 (+) | 375 | WP_005543325.1 | 30S ribosomal protein S12 | - |
Sequence
Protein
Download Length: 114 a.a. Molecular weight: 12373.07 Da Isoelectric Point: 9.7281
>NTDB_id=189618 A6B39_RS00970 WP_176669352.1 169908..170252(-) (comEA/comE1) [Mannheimia granulomatis strain BJ1680.3]
MKKIKAFTLSLLIGLSSHTFAQTQPINNTEQAPPTQAVEQVTNQSRINPNAVNINLASAAELQDKLVGIGEKKAQAIVDY
RTKNGNFKSIEQLTEVSGIGQATLEKNRANIVLE
MKKIKAFTLSLLIGLSSHTFAQTQPINNTEQAPPTQAVEQVTNQSRINPNAVNINLASAAELQDKLVGIGEKKAQAIVDY
RTKNGNFKSIEQLTEVSGIGQATLEKNRANIVLE
Nucleotide
Download Length: 345 bp
>NTDB_id=189618 A6B39_RS00970 WP_176669352.1 169908..170252(-) (comEA/comE1) [Mannheimia granulomatis strain BJ1680.3]
ATGAAAAAAATAAAGGCATTTACCTTAAGCTTATTAATTGGTTTATCCAGCCATACTTTCGCCCAAACCCAACCTATTAA
TAATACGGAACAAGCACCGCCTACTCAAGCGGTGGAACAAGTTACAAACCAAAGCAGAATCAACCCCAATGCGGTTAACA
TTAACCTAGCAAGTGCAGCCGAACTACAGGATAAATTAGTTGGTATAGGTGAGAAAAAAGCACAGGCGATTGTAGATTAC
CGCACTAAAAACGGTAATTTTAAAAGTATAGAGCAACTCACTGAGGTTTCAGGAATTGGACAAGCAACTTTAGAAAAAAA
TCGCGCTAATATCGTTTTAGAATAA
ATGAAAAAAATAAAGGCATTTACCTTAAGCTTATTAATTGGTTTATCCAGCCATACTTTCGCCCAAACCCAACCTATTAA
TAATACGGAACAAGCACCGCCTACTCAAGCGGTGGAACAAGTTACAAACCAAAGCAGAATCAACCCCAATGCGGTTAACA
TTAACCTAGCAAGTGCAGCCGAACTACAGGATAAATTAGTTGGTATAGGTGAGAAAAAAGCACAGGCGATTGTAGATTAC
CGCACTAAAAACGGTAATTTTAAAAGTATAGAGCAACTCACTGAGGTTTCAGGAATTGGACAAGCAACTTTAGAAAAAAA
TCGCGCTAATATCGTTTTAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
59.13 |
100 |
0.596 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
48.182 |
96.491 |
0.465 |
| comEA | Vibrio cholerae strain A1552 |
45.045 |
97.368 |
0.439 |
| comEA | Vibrio cholerae C6706 |
45.045 |
97.368 |
0.439 |
| comEA | Acinetobacter baylyi ADP1 |
34.615 |
100 |
0.395 |
| comEA | Vibrio campbellii strain DS40M4 |
41.121 |
93.86 |
0.386 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
56 |
65.789 |
0.368 |