Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   BCM43_RS15160 Genome accession   NZ_CP016588
Coordinates   2968671..2969252 (+) Length   193 a.a.
NCBI ID   WP_000991611.1    Uniprot ID   A0A9W5V399
Organism   Bacillus thuringiensis strain KNU-07     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2963671..2974252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCM43_RS15135 (BCM43_15135) - 2964790..2966157 (+) 1368 WP_001065164.1 lytic polysaccharide monooxygenase -
  BCM43_RS15140 (BCM43_15140) - 2966284..2966718 (-) 435 WP_001190864.1 GNAT family N-acetyltransferase -
  BCM43_RS15145 (BCM43_15145) rpiA 2966833..2967495 (-) 663 WP_001049987.1 ribose 5-phosphate isomerase A -
  BCM43_RS15150 (BCM43_15150) - 2967500..2967820 (-) 321 WP_065703907.1 2Fe-2S iron-sulfur cluster-binding protein -
  BCM43_RS15155 (BCM43_15155) - 2967963..2968649 (+) 687 WP_000337520.1 RNA polymerase subunit sigma-70 -
  BCM43_RS15160 (BCM43_15160) clpP 2968671..2969252 (+) 582 WP_000991611.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  BCM43_RS15165 (BCM43_15165) - 2969299..2970156 (-) 858 WP_065703909.1 glycine betaine ABC transporter substrate-binding protein -
  BCM43_RS15170 (BCM43_15170) - 2970328..2971533 (+) 1206 WP_000370606.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  BCM43_RS15175 (BCM43_15175) - 2971526..2972362 (+) 837 WP_001084760.1 proline/glycine betaine ABC transporter permease -
  BCM43_RS32855 (BCM43_15180) - 2972416..2972651 (-) 236 Protein_2968 hypothetical protein -
  BCM43_RS15185 (BCM43_15185) - 2972869..2973036 (+) 168 WP_000508470.1 hypothetical protein -
  BCM43_RS15190 (BCM43_15190) - 2973128..2973628 (+) 501 WP_003284488.1 HIT family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21191.46 Da        Isoelectric Point: 5.3277

>NTDB_id=189425 BCM43_RS15160 WP_000991611.1 2968671..2969252(+) (clpP) [Bacillus thuringiensis strain KNU-07]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDNVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=189425 BCM43_RS15160 WP_000991611.1 2968671..2969252(+) (clpP) [Bacillus thuringiensis strain KNU-07]
ATGAATGCAATTCCATATGTAGTAGAACAAACAAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
CCGCATTATTATTATCGGCTCAGAAATTAATGATCAAGTAGCGAGTAGTGTCGTAGCGCAATTATTATTTTTAGAAGCAG
AAGATGCAGAAAAAGATATATTCTTATACATCAATAGCCCTGGCGGTTCAACGACAGCAGGTTTTGCAATATTAGATACG
ATGAATTTAATTAAACCAGATGTGCAAACGCTATGCATGGGCTTTGCGGCATCATTCGGTGCATTGTTATTATTATCAGG
AGCAAAAGGAAAACGGTTTGCTCTCCCTAACAGTGAAATTATGATTCATCAGCCGCTTGGTGGCGCACAAGGGCAAGCAA
CAGAAATTGAAATAACTGCGAAAAGAATATTAAAGTTAAAGCATGATATTAATAAAATGATTGCAGAAAAAACGGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TAACGTTGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.586

98.964

0.679
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.196

97.927

0.658
  clpP Streptococcus pyogenes JRS4

56.085

97.927

0.549
  clpP Streptococcus pyogenes MGAS315

56.085

97.927

0.549
  clpP Streptococcus pneumoniae R6

55.208

99.482

0.549
  clpP Streptococcus pneumoniae TIGR4

55.208

99.482

0.549
  clpP Streptococcus pneumoniae Rx1

55.208

99.482

0.549
  clpP Streptococcus thermophilus LMG 18311

55.208

99.482

0.549
  clpP Streptococcus thermophilus LMD-9

55.208

99.482

0.549
  clpP Streptococcus pneumoniae D39

55.208

99.482

0.549
  clpP Streptococcus mutans UA159

53.968

97.927

0.528
  clpP Lactococcus lactis subsp. cremoris KW2

52.381

97.927

0.513
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.265

97.927

0.492

Multiple sequence alignment