Detailed information NTG0189141

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: BA953_RS02070
• Genome accession: NZ_CP016556
• Coordinates: 479215..480639 (+)
• Length: 474 a.a.
• NCBI ID: WP_065740233.1
• Uniprot ID: -
• Organism: Vibrio coralliilyticus strain 58
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 474215..485639

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BA953_RS02050 (BA953_02050)	cobT	474653..475681 (-)	1029	WP_065740230.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
BA953_RS02055 (BA953_02055)	-	475688..476299 (-)	612	WP_065740231.1	flavin reductase family protein	-
BA953_RS02060 (BA953_02060)	-	476824..477510 (+)	687	WP_081305517.1	NAD(P)H-binding protein	-
BA953_RS02065 (BA953_02065)	-	477702..479075 (+)	1374	WP_065740232.1	L-cystine transporter	-
BA953_RS02070 (BA953_02070)	sbcB	479215..480639 (+)	1425	WP_065740233.1	exodeoxyribonuclease I	Machinery gene
BA953_RS02075 (BA953_02075)	-	480785..481150 (+)	366	WP_006962035.1	CidA/LrgA family protein	-
BA953_RS02080 (BA953_02080)	-	481150..481827 (+)	678	WP_065740234.1	CidB/LrgB family autolysis modulator	-
BA953_RS02085 (BA953_02085)	cdd	482081..482968 (+)	888	WP_065740235.1	cytidine deaminase	-
BA953_RS02090 (BA953_02090)	-	483023..484225 (-)	1203	WP_031343039.1	HD-GYP domain-containing protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54582.92 Da
• Isoelectric Point: 5.2499

>NTDB_id=189141 BA953_RS02070 WP_065740233.1 479215..480639(+) (sbcB) [Vibrio coralliilyticus strain 58]
MQQAHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQTAASKGLPEP
EFIAKIHEQLSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENEEGFI
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGRECNY
TSWVVPVAWHPTNQNAVIVVDLAKDPQPLLDLDVGQLNERLYTKHSELGPDELPVPIKLVHLNKCPILAPAKTLTAENAA
NIGIDREKCLQNLERLRQHPEIREKLNSLYSIEREYEKSDDVDTMLYDGFFSPAAKQSMDIIRETEPKNLSALDISFSDD
RIAPLLFRYRARHFPWTLDESEQQKWAAHSREYFESRIEDYMLNLKNLVHEHESDEKKIAILKSVYQYVQKLVS

Nucleotide

• Length: 1425 bp

>NTDB_id=189141 BA953_RS02070 WP_065740233.1 479215..480639(+) (sbcB) [Vibrio coralliilyticus strain 58]
ATGCAACAAGCGCATCAACCTACGTTTTTCTTTTTTGATTATGAAACGTGGGGAACCAGCCCAGCAAAAGACAGACCGTC
CCAGTTTGCGGGTGTACGCACCGACATGGATTTCAATATCATCGGTGAGCCTCTTGTTATCTACTGCCAACCGCCTTCAG
ATTATCTTCCATCACCCGAAGCCGCGCTTATCACTGGTATCACACCTCAGACGGCGGCAAGTAAAGGGTTACCTGAGCCG
GAATTTATTGCCAAAATTCATGAGCAGTTGTCCACGCCAAACACCATCAACTTGGGTTACAATAGCATTCGATTTGATGA
CGAAGTGACGCGATATACCTGTTACCGAAATTTCATCGATCCGTATGCGTGGAGCTGGCAAAACGGCAACTCTCGCTGGG
ACTTACTCGATGTCATGCGCGCCTGTCACGCCCTTCGCCCAGAAGGTATTAATTGGCCAGAGAATGAAGAAGGTTTTATC
AGCTTTAAGCTAGAGCACTTATCCGTTGCCAATGGCATTGAGCACGAGAATGCACACGATGCCATGGCTGACGTTATAGC
AACGATTGAAATGGCTAAAAAGGTAAAAGCCGCTCAGCCTAAGCTCTTTGATTATTTCCTTAGCATGCGCCACAAGCGCA
AACTGAACGAACTCGTCGATATCGTGAATATGACACCGCTTATGCACGTATCGGGTATGTTGGGACGCGAATGCAATTAC
ACTAGCTGGGTGGTTCCGGTCGCTTGGCATCCAACCAACCAGAATGCGGTGATTGTTGTCGATTTAGCGAAAGACCCTCA
GCCTTTGTTGGATTTAGATGTAGGACAGCTTAATGAGCGTCTCTACACCAAACATTCTGAACTTGGCCCAGACGAACTGC
CTGTACCAATCAAACTTGTCCATCTCAACAAGTGCCCTATTTTGGCTCCAGCCAAAACATTAACTGCTGAGAATGCAGCT
AACATAGGCATTGACAGAGAAAAATGCTTACAAAACCTTGAGCGACTTAGACAACATCCAGAGATTAGAGAAAAACTCAA
TTCGCTATACAGTATCGAGAGAGAATACGAAAAGAGCGATGATGTTGATACTATGCTTTACGATGGTTTCTTCTCCCCTG
CGGCAAAGCAATCAATGGATATCATACGAGAAACTGAACCAAAGAATCTTTCCGCCCTTGATATCTCATTCAGTGACGAC
AGAATTGCTCCGCTTCTATTCCGCTATCGCGCCAGACATTTTCCGTGGACATTGGACGAGAGTGAACAACAAAAATGGGC
AGCACACAGCCGCGAGTACTTCGAAAGTCGAATTGAAGACTACATGTTGAATTTGAAAAACTTAGTTCACGAGCATGAGA
GTGACGAAAAAAAGATAGCTATCTTAAAATCTGTTTACCAATACGTTCAAAAGCTAGTATCTTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	78.647	99.789	0.785