Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   BBD27_RS10655 Genome accession   NZ_CP016394
Coordinates   75833..75994 (+) Length   53 a.a.
NCBI ID   WP_014727422.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ND07     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 68137..96761 75833..75994 within 0


Gene organization within MGE regions


Location: 68137..96761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBD27_RS00355 (BBD27_0079) - 68137..68472 (-) 336 WP_002948199.1 hypothetical protein -
  BBD27_RS00360 (BBD27_0080) - 68588..69754 (-) 1167 WP_011227104.1 tyrosine-type recombinase/integrase -
  BBD27_RS09855 (BBD27_0081) - 69837..70298 (-) 462 WP_405183738.1 helix-turn-helix transcriptional regulator -
  BBD27_RS00370 (BBD27_0082) - 70512..70709 (+) 198 WP_014608200.1 helix-turn-helix domain-containing protein -
  BBD27_RS00375 (BBD27_0083) - 70948..71241 (+) 294 WP_024704078.1 hypothetical protein -
  BBD27_RS00380 - 71245..71439 (+) 195 WP_024704077.1 hypothetical protein -
  BBD27_RS00385 (BBD27_0084) - 71453..71689 (+) 237 WP_024704076.1 hypothetical protein -
  BBD27_RS00390 (BBD27_0085) - 71932..72204 (+) 273 WP_011227098.1 MerR family transcriptional regulator -
  BBD27_RS00395 (BBD27_0086) - 72219..73079 (+) 861 WP_024704075.1 primase alpha helix C-terminal domain-containing protein -
  BBD27_RS00400 (BBD27_0087) - 73069..74574 (+) 1506 WP_024704074.1 DNA primase family protein -
  BBD27_RS00405 (BBD27_0088) - 74872..75057 (+) 186 WP_024704073.1 hypothetical protein -
  BBD27_RS00410 (BBD27_0089) - 75074..75349 (+) 276 WP_014727423.1 hypothetical protein -
  BBD27_RS10655 (BBD27_0091) prx 75833..75994 (+) 162 WP_014727422.1 hypothetical protein Regulator
  BBD27_RS00415 (BBD27_0092) pabB 76414..78132 (+) 1719 WP_014608193.1 aminodeoxychorismate synthase component I -
  BBD27_RS00420 (BBD27_0093) - 78309..80945 (+) 2637 WP_014621434.1 calcium-translocating P-type ATPase, PMCA-type -
  BBD27_RS10660 - 81144..82493 (+) 1350 Protein_81 IS3 family transposase -
  BBD27_RS00445 (BBD27_0099) dltD 82546..83814 (-) 1269 WP_011681024.1 D-alanyl-lipoteichoic acid biosynthesis protein DltD -
  BBD27_RS00450 (BBD27_0100) dltC 83807..84046 (-) 240 WP_002950439.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -
  BBD27_RS00455 (BBD27_0101) dltB 84064..85311 (-) 1248 WP_014608186.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -
  BBD27_RS00460 (BBD27_0102) dltA 85308..86858 (-) 1551 WP_011681022.1 D-alanine--poly(phosphoribitol) ligase subunit DltA -
  BBD27_RS00465 - 86867..86998 (-) 132 WP_002885174.1 teichoic acid D-Ala incorporation-associated protein DltX -
  BBD27_RS00470 (BBD27_0104) - 87175..88923 (-) 1749 WP_011681020.1 ABC transporter ATP-binding protein -
  BBD27_RS00475 (BBD27_0105) - 88913..90652 (-) 1740 WP_011681019.1 ABC transporter ATP-binding protein -
  BBD27_RS00480 (BBD27_0106) - 90685..91296 (-) 612 WP_014621429.1 lysozyme family protein -
  BBD27_RS00485 (BBD27_0107) - 91298..92275 (-) 978 WP_014608183.1 nucleoid-associated protein -
  BBD27_RS00490 (BBD27_0108) glyA 92282..93532 (-) 1251 WP_011227085.1 serine hydroxymethyltransferase -
  BBD27_RS00495 (BBD27_0109) - 93627..94232 (-) 606 WP_002948474.1 L-threonylcarbamoyladenylate synthase -
  BBD27_RS00500 (BBD27_0110) prmC 94219..95052 (-) 834 WP_011681016.1 peptide chain release factor N(5)-glutamine methyltransferase -
  BBD27_RS00505 (BBD27_0111) prfA 95049..96128 (-) 1080 WP_002948472.1 peptide chain release factor 1 -
  BBD27_RS00510 (BBD27_0112) - 96165..96761 (-) 597 WP_011225787.1 thymidine kinase -

Sequence

Protein


Download         Length: 53 a.a.        Molecular weight: 6084.95 Da        Isoelectric Point: 4.2412

>NTDB_id=187871 BBD27_RS10655 WP_014727422.1 75833..75994(+) (prx) [Streptococcus thermophilus strain ND07]
MLTYDEFKEAMDKGFIKGDTVQIVRLDGEQVEPREILSLEKVSDIIKELGKDN

Nucleotide


Download         Length: 162 bp        

>NTDB_id=187871 BBD27_RS10655 WP_014727422.1 75833..75994(+) (prx) [Streptococcus thermophilus strain ND07]
ATGCTGACTTATGATGAATTTAAAGAGGCAATGGACAAGGGTTTTATTAAAGGTGATACTGTCCAGATTGTCCGATTAGA
CGGTGAACAAGTTGAGCCACGCGAAATATTGAGCTTAGAAAAGGTATCGGATATAATAAAGGAACTAGGCAAGGACAACT
AA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS8232

48.333

100

0.547
  prx Streptococcus pyogenes MGAS315

46.667

100

0.528
  prx Streptococcus pyogenes MGAS315

46.667

100

0.528
  prx Streptococcus pyogenes MGAS315

45

100

0.509
  prx Streptococcus pyogenes MGAS315

56.818

83.019

0.472
  prx Streptococcus pyogenes MGAS315

57.143

79.245

0.453
  prx Streptococcus pyogenes MGAS315

60.526

71.698

0.434

Multiple sequence alignment