Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   vm_RS05335 Genome accession   NZ_CP016383
Coordinates   1087889..1088200 (+) Length   103 a.a.
NCBI ID   WP_070381571.1    Uniprot ID   -
Organism   Vibrio mimicus strain SCCF01     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1088393..1088854 1087889..1088200 flank 193


Gene organization within MGE regions


Location: 1087889..1088854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vm_RS05335 (VM_05340) comEA 1087889..1088200 (+) 312 WP_070381571.1 ComEA family DNA-binding protein Machinery gene
  vm_RS05340 (VM_05345) tnpA 1088393..1088854 (+) 462 WP_070381572.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11001.82 Da        Isoelectric Point: 4.4982

>NTDB_id=187683 vm_RS05335 WP_070381571.1 1087889..1088200(+) (comEA) [Vibrio mimicus strain SCCF01]
MQFKTTLMAILLSLCLPAMPMLVSAEETNPTAQTEEGIVITVNVNTASAEELATLLKGIGLKKAQAIVDYREANGPFISI
DDLTNVKGIGEATVRNNATRILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=187683 vm_RS05335 WP_070381571.1 1087889..1088200(+) (comEA) [Vibrio mimicus strain SCCF01]
ATGCAATTCAAAACAACACTTATGGCAATTCTGCTTTCACTCTGTTTACCAGCCATGCCTATGCTGGTTAGTGCTGAGGA
AACAAACCCGACGGCGCAAACTGAAGAAGGTATTGTCATTACTGTGAATGTCAATACGGCTTCGGCAGAAGAGCTTGCCA
CTTTGCTAAAAGGTATCGGGCTTAAAAAAGCACAGGCGATTGTCGATTATCGTGAGGCTAATGGTCCTTTTATCAGCATC
GACGATCTGACGAATGTGAAAGGCATTGGTGAAGCAACCGTACGCAACAACGCGACTCGCATATTGCTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

81.553

100

0.816
  comEA Vibrio cholerae strain A1552

81.553

100

0.816
  comEA Vibrio campbellii strain DS40M4

60.825

94.175

0.573
  comEA Vibrio parahaemolyticus RIMD 2210633

61.458

93.204

0.573
  comE1/comEA Haemophilus influenzae Rd KW20

39.423

100

0.398
  comEA Legionella pneumophila str. Paris

38.384

96.117

0.369
  comEA Legionella pneumophila strain ERS1305867

38.384

96.117

0.369

Multiple sequence alignment