Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   BA894_RS05090 Genome accession   NZ_CP016351
Coordinates   1116723..1117007 (+) Length   94 a.a.
NCBI ID   WP_031779272.1    Uniprot ID   A0AAN0Y541
Organism   Vibrio natriegens strain CCUG 16374     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1111723..1122007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA894_RS05080 (BA894_05080) - 1114200..1114472 (+) 273 WP_014231223.1 HU family DNA-binding protein -
  BA894_RS05085 (BA894_05085) ppiD 1114676..1116535 (+) 1860 WP_020336144.1 peptidylprolyl isomerase -
  BA894_RS05090 (BA894_05090) comEA 1116723..1117007 (+) 285 WP_031779272.1 ComEA family DNA-binding protein Machinery gene
  BA894_RS05095 (BA894_05095) rrtA 1117089..1117640 (-) 552 WP_020336146.1 rhombosortase -
  BA894_RS05100 (BA894_05100) - 1117644..1118267 (+) 624 WP_065296543.1 tRNA-uridine aminocarboxypropyltransferase -
  BA894_RS05105 (BA894_05105) - 1118264..1119586 (-) 1323 WP_065296544.1 anti-phage deoxyguanosine triphosphatase -
  BA894_RS05110 (BA894_05110) yfbR 1119610..1119969 (-) 360 Protein_977 5'-deoxynucleotidase -
  BA894_RS05115 (BA894_05115) - 1120295..1121239 (+) 945 WP_065296545.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10182.78 Da        Isoelectric Point: 5.0914

>NTDB_id=187246 BA894_RS05090 WP_031779272.1 1116723..1117007(+) (comEA) [Vibrio natriegens strain CCUG 16374]
MKWVLTLLLCVFAPFGLAADTTADKYEGIEITVNINSATAEEIATMLKGIGEKKAQDIVDYRTEHGPFKTVSDLGNVKGI
GDATLKKNEGRIIL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=187246 BA894_RS05090 WP_031779272.1 1116723..1117007(+) (comEA) [Vibrio natriegens strain CCUG 16374]
ATGAAATGGGTTTTAACTTTATTGTTATGCGTATTTGCACCGTTTGGGTTGGCAGCAGATACAACAGCGGATAAATATGA
AGGAATTGAAATTACCGTAAACATCAATTCAGCGACAGCTGAAGAGATTGCAACAATGCTGAAAGGGATTGGTGAAAAGA
AAGCGCAAGATATTGTCGATTATCGTACAGAGCATGGCCCATTTAAAACAGTGAGTGACCTGGGGAATGTTAAGGGAATC
GGAGATGCTACTTTGAAGAAAAACGAAGGTCGCATCATCCTCTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

82.979

100

0.83
  comEA Vibrio campbellii strain DS40M4

71.579

100

0.723
  comEA Vibrio cholerae strain A1552

57.447

100

0.574
  comEA Vibrio cholerae C6706

57.447

100

0.574
  comE1/comEA Haemophilus influenzae Rd KW20

56.452

65.957

0.372
  comEA/comE1 Glaesserella parasuis strain SC1401

56.452

65.957

0.372
  comEA Acinetobacter baylyi ADP1

50.746

71.277

0.362

Multiple sequence alignment