Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | THL1_RS09870 | Genome accession | NZ_CP015992 |
| Coordinates | 2140605..2140925 (+) | Length | 106 a.a. |
| NCBI ID | WP_069083111.1 | Uniprot ID | A0A1B3E4S9 |
| Organism | Pseudomonas sp. TCU-HL1 isolate Hualien Taiwan | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2121925..2140925 | 2140605..2140925 | within | 0 |
| IScluster/Tn | 2141039..2144923 | 2140605..2140925 | flank | 114 |
Gene organization within MGE regions
Location: 2121925..2144923
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| THL1_RS09795 (THL1_1974) | ihfB | 2121925..2122209 (+) | 285 | WP_069083097.1 | integration host factor subunit beta | - |
| THL1_RS09800 (THL1_1975) | - | 2123052..2125925 (+) | 2874 | WP_083245856.1 | lipid II flippase MurJ | - |
| THL1_RS09805 (THL1_1976) | wbpA | 2126223..2127536 (+) | 1314 | WP_069083099.1 | UDP-N-acetyl-D-glucosamine 6-dehydrogenase | - |
| THL1_RS09810 (THL1_1977) | wbpB | 2127555..2128505 (+) | 951 | WP_069083100.1 | UDP-N-acetyl-2-amino-2-deoxy-D-glucuronate oxidase | - |
| THL1_RS09815 (THL1_1978) | - | 2128513..2129094 (+) | 582 | WP_069083101.1 | acyltransferase | - |
| THL1_RS09820 (THL1_1979) | - | 2129098..2130195 (+) | 1098 | WP_069083102.1 | DegT/DnrJ/EryC1/StrS family aminotransferase | - |
| THL1_RS09825 (THL1_1980) | - | 2130298..2131332 (+) | 1035 | WP_069083103.1 | hypothetical protein | - |
| THL1_RS09830 (THL1_1981) | - | 2131332..2132732 (+) | 1401 | WP_069083104.1 | lipopolysaccharide biosynthesis protein | - |
| THL1_RS09835 (THL1_1982) | - | 2133269..2133874 (+) | 606 | WP_069083105.1 | glycosyltransferase | - |
| THL1_RS09840 (THL1_1983) | - | 2133926..2134816 (+) | 891 | WP_069083106.1 | glycosyltransferase family 2 protein | - |
| THL1_RS09845 (THL1_1984) | - | 2134871..2136007 (+) | 1137 | WP_069083107.1 | glycosyltransferase | - |
| THL1_RS09850 (THL1_1985) | - | 2136020..2136616 (+) | 597 | WP_069083108.1 | sugar transferase | - |
| THL1_RS09855 (THL1_1986) | - | 2136613..2137230 (+) | 618 | WP_069083109.1 | acetyltransferase | - |
| THL1_RS09860 (THL1_1987) | - | 2137295..2138470 (+) | 1176 | WP_069083110.1 | DegT/DnrJ/EryC1/StrS family aminotransferase | - |
| THL1_RS09865 (THL1_1988) | - | 2138587..2140545 (+) | 1959 | WP_069086464.1 | polysaccharide biosynthesis protein | - |
| THL1_RS09870 (THL1_1989) | comE1/comEA | 2140605..2140925 (+) | 321 | WP_069083111.1 | ComEA family DNA-binding protein | Machinery gene |
| THL1_RS09875 (THL1_1990) | tnpC | 2141039..2141633 (-) | 595 | Protein_1986 | IS66 family transposase | - |
| THL1_RS09880 (THL1_1991) | tnpB | 2141710..2142066 (+) | 357 | WP_003449170.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| THL1_RS09885 (THL1_1992) | tnpC | 2142086..2143585 (+) | 1500 | WP_083245827.1 | IS66 family transposase | - |
| THL1_RS09890 (THL1_1993) | tnpC | 2143630..2144547 (-) | 918 | Protein_1989 | IS66 family transposase | - |
| THL1_RS09895 (THL1_1994) | tnpB | 2144567..2144923 (-) | 357 | WP_003449170.1 | IS66 family insertion sequence element accessory protein TnpB | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11289.02 Da Isoelectric Point: 6.3116
>NTDB_id=184974 THL1_RS09870 WP_069083111.1 2140605..2140925(+) (comE1/comEA) [Pseudomonas sp. TCU-HL1 isolate Hualien Taiwan]
MIRVRIASLFIVLCSLFVGYSPLAAAAKVETTAASSAEAQAGKLNINAADVVAIQDRLIGIGEAKAKAIVQYREENGPFS
SVDDLLEVKGIGVKTLDRNRDRLSVE
MIRVRIASLFIVLCSLFVGYSPLAAAAKVETTAASSAEAQAGKLNINAADVVAIQDRLIGIGEAKAKAIVQYREENGPFS
SVDDLLEVKGIGVKTLDRNRDRLSVE
Nucleotide
Download Length: 321 bp
>NTDB_id=184974 THL1_RS09870 WP_069083111.1 2140605..2140925(+) (comE1/comEA) [Pseudomonas sp. TCU-HL1 isolate Hualien Taiwan]
ATGATTCGCGTTCGAATCGCCTCGCTGTTTATCGTCCTCTGTTCTCTCTTCGTTGGTTACAGCCCCCTCGCAGCTGCTGC
GAAGGTAGAGACAACTGCCGCTTCAAGTGCTGAAGCACAGGCTGGCAAGCTAAACATCAACGCAGCCGATGTGGTTGCTA
TCCAGGATCGGTTGATTGGTATTGGCGAAGCGAAAGCCAAGGCGATCGTCCAGTACCGCGAGGAGAACGGACCGTTCTCT
TCGGTCGATGACCTGCTTGAGGTCAAGGGGATTGGTGTAAAGACGCTTGATAGGAATCGCGACAGGCTTAGCGTGGAGTA
A
ATGATTCGCGTTCGAATCGCCTCGCTGTTTATCGTCCTCTGTTCTCTCTTCGTTGGTTACAGCCCCCTCGCAGCTGCTGC
GAAGGTAGAGACAACTGCCGCTTCAAGTGCTGAAGCACAGGCTGGCAAGCTAAACATCAACGCAGCCGATGTGGTTGCTA
TCCAGGATCGGTTGATTGGTATTGGCGAAGCGAAAGCCAAGGCGATCGTCCAGTACCGCGAGGAGAACGGACCGTTCTCT
TCGGTCGATGACCTGCTTGAGGTCAAGGGGATTGGTGTAAAGACGCTTGATAGGAATCGCGACAGGCTTAGCGTGGAGTA
A
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
46.364 |
100 |
0.481 |
| comEA | Vibrio cholerae C6706 |
43.137 |
96.226 |
0.415 |
| comEA | Vibrio cholerae strain A1552 |
43.137 |
96.226 |
0.415 |
| comE | Neisseria gonorrhoeae MS11 |
43.299 |
91.509 |
0.396 |
| comE | Neisseria gonorrhoeae MS11 |
43.299 |
91.509 |
0.396 |
| comE | Neisseria gonorrhoeae MS11 |
43.299 |
91.509 |
0.396 |
| comE | Neisseria gonorrhoeae MS11 |
43.299 |
91.509 |
0.396 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
43.158 |
89.623 |
0.387 |
| comEA | Vibrio campbellii strain DS40M4 |
42.708 |
90.566 |
0.387 |