Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   LLJM4_RS09095 Genome accession   NZ_CP015909
Coordinates   1806826..1807425 (+) Length   199 a.a.
NCBI ID   WP_011834647.1    Uniprot ID   A0A166TF89
Organism   Lactococcus cremoris strain JM4     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1801826..1812425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLJM4_RS09070 (LLJM4_03905) - 1802773..1803990 (+) 1218 WP_311095605.1 IS256-like element IS905 family transposase -
  LLJM4_RS09075 (LLJM4_0603) - 1803987..1805150 (+) 1164 WP_134047269.1 DUF998 domain-containing protein -
  LLJM4_RS09080 (LLJM4_0602) - 1805247..1805381 (+) 135 WP_014572996.1 hypothetical protein -
  LLJM4_RS09085 (LLJM4_0601) spx 1805532..1805930 (-) 399 WP_003129597.1 transcriptional regulator Spx -
  LLJM4_RS09090 (LLJM4_0600) - 1806100..1806630 (-) 531 WP_011675638.1 hypothetical protein -
  LLJM4_RS09095 (LLJM4_0599) clpP 1806826..1807425 (+) 600 WP_011834647.1 ATP-dependent Clp protease proteolytic subunit Regulator
  LLJM4_RS09100 (LLJM4_0598) icd 1807465..1808703 (-) 1239 WP_134047268.1 NADP-dependent isocitrate dehydrogenase -
  LLJM4_RS09105 (LLJM4_0597) acnA 1808723..1811269 (-) 2547 WP_134047267.1 aconitate hydratase AcnA -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22052.21 Da        Isoelectric Point: 4.7423

>NTDB_id=183418 LLJM4_RS09095 WP_011834647.1 1806826..1807425(+) (clpP) [Lactococcus cremoris strain JM4]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGAGQGTQQTDMAIVAEQLLKTRKRLEQILADN
SNRSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSLK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=183418 LLJM4_RS09095 WP_011834647.1 1806826..1807425(+) (clpP) [Lactococcus cremoris strain JM4]
ATGGGTTATTTAGTACCTACCGTTATTGAACAATCAAGCCGTGGTGAACGTGCTTATGATATTTATTCACGACTTTTAAA
AGACCGTATTATCATGCTGACAGGACCTGTTGAAGATGGTATGGCAAATTCTATCATTGCCCAACTTCTTTTCTTGGATG
CACAAGATAATACTAAAGACATTTATCTCTATGTAAACACCCCTGGTGGTTCTGTATCAGCTGGGCTCGCTATCGTGGAT
ACAATGAACTTTATCAAATCGGATGTCCAAACTATCGTTATGGGAATGGCTGCTTCTATGGGAACAATCATCGCCTCAAG
CGGTACTAAGGGTAAACGATTCATGTTACCAAATGCTGAATACCTCATTCACCAACCAATGGGTGGTGCAGGTCAAGGTA
CTCAACAAACTGATATGGCAATCGTCGCCGAACAACTTTTGAAAACACGTAAACGTTTGGAACAAATCCTTGCTGATAAT
TCTAATCGCTCACTTGAACAAATTCACAAAGATGCTGAACGTGACCATTGGATGGATGCCAAAGAAACTTTAGAATATGG
TTTCATTGATGAAATTATGGAAAATAATTCATTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166TF89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

100

100

1
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

99.497

100

0.995
  clpP Streptococcus mutans UA159

87.245

98.492

0.859
  clpP Streptococcus thermophilus LMD-9

86.735

98.492

0.854
  clpP Streptococcus thermophilus LMG 18311

86.735

98.492

0.854
  clpP Streptococcus pyogenes MGAS315

85.714

98.492

0.844
  clpP Streptococcus pyogenes JRS4

85.714

98.492

0.844
  clpP Streptococcus pneumoniae D39

84.615

97.99

0.829
  clpP Streptococcus pneumoniae TIGR4

84.615

97.99

0.829
  clpP Streptococcus pneumoniae R6

84.615

97.99

0.829
  clpP Streptococcus pneumoniae Rx1

84.615

97.99

0.829
  clpP Bacillus subtilis subsp. subtilis str. 168

57.895

95.477

0.553
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.995

96.985

0.553

Multiple sequence alignment