Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LLUC109_RS08340 Genome accession   NZ_CP015907
Coordinates   1655564..1657369 (-) Length   601 a.a.
NCBI ID   WP_081172469.1    Uniprot ID   A0AAJ6N339
Organism   Lactococcus cremoris strain UC109     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1650564..1662369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC109_RS08325 (LLUC109_1604) alaS 1650916..1653534 (-) 2619 WP_011676721.1 alanine--tRNA ligase -
  LLUC109_RS08330 (LLUC109_1605) - 1653796..1654722 (-) 927 WP_014572243.1 peptidyl-prolyl cis-trans isomerase -
  LLUC109_RS08335 (LLUC109_1606) - 1654878..1655561 (-) 684 WP_011676723.1 O-methyltransferase -
  LLUC109_RS08340 (LLUC109_1607) pepF 1655564..1657369 (-) 1806 WP_081172469.1 oligoendopeptidase F Regulator
  LLUC109_RS08345 (LLUC109_1608) - 1657444..1658427 (-) 984 Protein_1621 competence protein CoiA -
  LLUC109_RS08350 (LLUC109_1609) - 1658502..1659588 (-) 1087 Protein_1622 YdcF family protein -
  LLUC109_RS08355 (LLUC109_1610) - 1659742..1660329 (-) 588 WP_014572239.1 alpha/beta hydrolase -
  LLUC109_RS08360 (LLUC109_02930) - 1660368..1660565 (-) 198 WP_250638141.1 alpha/beta hydrolase -
  LLUC109_RS08365 (LLUC109_1611) - 1660798..1662219 (-) 1422 WP_015082720.1 NCS2 family permease -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69981.71 Da        Isoelectric Point: 4.9158

>NTDB_id=183322 LLUC109_RS08340 WP_081172469.1 1655564..1657369(-) (pepF) [Lactococcus cremoris strain UC109]
MVKNRNEIPEALTWDLTTIFSTDQKWETELEKVKKELSLVETNDKGHLLDSAETLLTITKNMLSISQKVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVNFGESYAFYEPEFLKITKETYEQWLEILQELKNYDHMFERLFAKKEHILSQKEEKILAA
AGEIFESPSETFEIFDNADVKFPFVKNELGEKIQLTHGNYSSLMESKNREVRKAAYEALYSNYEQYQHTYAKTLQTNVKV
HNFNAQIRAYDSARQAALMSNFVPEKVYDVLIEGIHQHLPLLHRYIELRKKILGISDFKMYDIYTPLSNLDYKFNYTEGV
KKAQEVLAIFGEEYSQKVKAAFDERWIDVEENVGKRSGAYSGGSYDTKAFMLLNWQGTLDDLFTLVHEMGHSIHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESNDEKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEVDAEGEVLTSE
FLNSLYGELNEKYYGLSAKETPEIQFEWARIPHFYYNFYVFQYATGFAAASFLAEKVVHGSATDRQNYLDYLKAGSSAYP
LDVIAKAGVNMESTDYLESAFKLFEKRLNELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=183322 LLUC109_RS08340 WP_081172469.1 1655564..1657369(-) (pepF) [Lactococcus cremoris strain UC109]
ATGGTAAAAAATAGAAATGAAATCCCTGAAGCCTTGACTTGGGATTTGACAACAATTTTTTCAACAGATCAAAAATGGGA
AACAGAATTAGAGAAGGTAAAAAAAGAGCTTTCGCTTGTTGAGACAAATGATAAAGGTCATTTACTTGATTCAGCAGAAA
CTTTACTGACAATTACTAAAAATATGCTATCAATTTCTCAAAAAGTTGAAAAGCTTTATGTTTATGCTTCAATGAAAAAT
GATCAAGATACAAGAGAAGCAAAGTATCAAGAATATCAATCAAAAGCAACGGCCCTCTATGTTAATTTTGGGGAAAGCTA
TGCCTTTTATGAACCTGAGTTTTTAAAAATTACAAAAGAAACCTACGAACAATGGTTAGAAATCCTTCAGGAATTGAAAA
ATTACGATCACATGTTTGAACGTTTATTTGCTAAAAAAGAACATATCCTTAGTCAAAAAGAAGAAAAAATATTGGCGGCA
GCGGGTGAAATCTTTGAAAGTCCTTCGGAGACTTTTGAAATTTTCGATAATGCAGATGTTAAATTTCCTTTTGTTAAAAA
TGAATTGGGAGAAAAGATTCAGTTGACACATGGAAATTATAGCTCTCTTATGGAAAGTAAAAACAGGGAAGTAAGAAAAG
CGGCTTATGAAGCACTTTACAGCAATTATGAACAATATCAGCATACCTATGCAAAAACTTTGCAGACCAATGTAAAAGTT
CATAATTTCAATGCCCAAATACGCGCATATGATTCAGCACGTCAGGCAGCTTTGATGAGTAATTTTGTTCCAGAAAAAGT
TTATGACGTCTTGATAGAAGGCATTCATCAACACTTACCACTTTTACATCGCTATATTGAATTACGTAAAAAAATCTTAG
GAATTTCTGATTTCAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTCAATTACACTGAAGGAGTT
AAGAAAGCGCAAGAAGTGCTTGCAATTTTTGGTGAAGAGTATAGTCAGAAAGTTAAAGCGGCTTTTGATGAACGTTGGAT
TGATGTTGAAGAAAATGTCGGGAAACGGTCAGGGGCATACTCAGGTGGTTCTTATGATACCAAGGCATTCATGTTACTCA
ATTGGCAAGGGACATTGGACGATCTTTTTACATTGGTTCATGAGATGGGGCATTCTATTCACAGCACTTTTACGAGGGAA
AATCAACCTTATGTTTATGGAGATTACCCAATCTTCTTAGCAGAGATTGCTTCAACTACCAATGAAAATATTTTAACTGA
GACTTTGCTCAAAGAAAGCAATGATGAAAAGGAACGTTTTGCTCTTTTGAACCATTGGTTAGATAGTTTTCGAGGAACCG
TATTTCGTCAAAGTCAATTTGCTGAATTTGAACAAAAAATTCACGAAGTCGATGCTGAAGGTGAAGTATTGACGAGCGAA
TTTTTGAATTCTCTTTATGGCGAACTTAATGAAAAATATTATGGCTTATCTGCCAAAGAAACTCCTGAAATTCAGTTTGA
ATGGGCAAGAATTCCGCATTTCTATTATAATTTTTACGTTTTTCAATACGCAACAGGCTTTGCCGCAGCCTCATTTCTAG
CTGAAAAAGTGGTGCATGGTTCGGCTACTGACCGCCAAAATTATCTTGATTATTTAAAAGCTGGTTCATCAGCCTATCCA
CTAGACGTGATTGCAAAAGCTGGAGTTAATATGGAATCTACAGATTACTTAGAGTCTGCTTTTAAGCTTTTTGAAAAACG
TTTGAATGAATTAGAAAAATTAGTTGAAAAAGGAGTCCATCTTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-582)

Oligopeptidase F (Peptidase_M3_N)

(113-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

63.894

100

0.639

Multiple sequence alignment