Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilE   Type   Machinery gene
Locus tag   AT729_RS00135 Genome accession   NZ_CP015886
Coordinates   17821..18171 (-) Length   116 a.a.
NCBI ID   WP_079889311.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 38277     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 12821..23171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT729_RS00110 (AT729_00017) lpxC 14570..15493 (-) 924 WP_002216134.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  AT729_RS00120 (AT729_00018) - 16336..16713 (-) 378 Protein_16 pilin -
  AT729_RS00125 (AT729_00019) pilE 16847..17185 (-) 339 WP_079889310.1 pilin Machinery gene
  AT729_RS00130 (AT729_00020) - 17384..17737 (-) 354 Protein_18 pilin -
  AT729_RS00135 (AT729_00021) pilE 17821..18171 (-) 351 WP_079889311.1 pilin Machinery gene
  AT729_RS00145 (AT729_00022) - 18462..18845 (-) 384 Protein_20 pilin -
  AT729_RS00150 (AT729_00023) - 18955..19362 (-) 408 Protein_21 pilin -
  AT729_RS00155 (AT729_00024) - 19482..19832 (-) 351 Protein_22 pilin -
  AT729_RS00160 (AT729_00025) - 20176..20562 (-) 387 Protein_23 pilin -
  AT729_RS00165 (AT729_00026) - 20745..21173 (-) 429 Protein_24 pilin -
  AT729_RS14035 - 21696..22001 (-) 306 Protein_25 pilin -
  AT729_RS14525 (AT729_00028) - 22059..22415 (-) 357 Protein_26 pilin -
  AT729_RS00180 (AT729_00029) - 22444..22773 (-) 330 WP_002218455.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  AT729_RS00185 (AT729_00030) - 22851..23069 (-) 219 WP_002218456.1 DUF2061 domain-containing protein -

Sequence


Protein


Download         Length: 116 a.a.        Molecular weight: 12446.20 Da        Isoelectric Point: 10.2432

>NTDB_id=182766 AT729_RS00135 WP_079889311.1 17821..18171(-) (pilE) [Neisseria meningitidis strain 38277]
MAEGQKSAVTEYYLNHGIWPGGNSDAGVASSSTIKGKYVQKVEVKNGVVTATMLSTGVNKEIQGKKLSLWAKRQDGSVKW
FCGLPVTRDAVAKDDAVTAAASDKQIDTKLKKPFSR

Nucleotide


Download         Length: 351 bp        

>NTDB_id=182766 AT729_RS00135 WP_079889311.1 17821..18171(-) (pilE) [Neisseria meningitidis strain 38277]
TTGGCTGAAGGTCAAAAATCAGCCGTCACCGAGTATTACCTGAATCACGGCATATGGCCCGGCGGCAACAGTGATGCCGG
CGTGGCATCTTCTTCAACAATCAAAGGCAAATATGTTCAGAAAGTTGAAGTCAAAAACGGCGTCGTTACCGCCACAATGC
TTTCAACCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGG
TTCTGCGGACTGCCGGTTACGCGCGACGCCGTCGCCAAAGACGACGCCGTTACCGCCGCCGCCAGCGACAAGCAGATCGA
CACCAAACTAAAGAAACCGTTTTCCCGATAA

Domains


Predicted by InterproScan.

(2-89)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

76.147

93.966

0.716

  pilE Neisseria gonorrhoeae MS11

72.727

94.828

0.69


Multiple sequence alignment