Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAII   Type   Regulator
Locus tag   PS273GM_RS02680 Genome accession   NZ_CP015641
Coordinates   594782..595234 (+) Length   150 a.a.
NCBI ID   WP_335743695.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain 273     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 589782..600234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PS273GM_RS02660 (PS273GM_02660) pilD 590296..591162 (-) 867 WP_045424777.1 prepilin peptidase Machinery gene
  PS273GM_RS02665 (PS273GM_02665) pilC 591165..592382 (-) 1218 WP_045424774.1 type II secretion system F family protein Machinery gene
  PS273GM_RS02670 (PS273GM_02670) pilB 592384..594087 (-) 1704 WP_064480512.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PS273GM_RS02675 (PS273GM_02675) pilA/pilAI 594324..594740 (+) 417 WP_420480417.1 pilin Machinery gene
  PS273GM_RS02680 (PS273GM_02680) pilA/pilAII 594782..595234 (+) 453 WP_335743695.1 pilin Regulator
  PS273GM_RS02685 (PS273GM_02685) - 595269..596651 (+) 1383 WP_231107999.1 O-antigen ligase family protein -
  PS273GM_RS02690 (PS273GM_02690) tfpZ 596660..597397 (+) 738 WP_045431604.1 TfpX/TfpZ family type IV pilin accessory protein -
  PS273GM_RS02695 (PS273GM_02695) cysN 597521..599419 (-) 1899 WP_045424763.1 sulfate adenylyltransferase subunit CysN -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 15763.27 Da        Isoelectric Point: 8.6399

>NTDB_id=181640 PS273GM_RS02680 WP_335743695.1 594782..595234(+) (pilA/pilAII) [Stutzerimonas stutzeri strain 273]
MPAFYLEKNMKPAKGSCRGFSLIELMIVLSIIGVLSTIAFAAYQNHTVRTTAAAALAEITPAKAAFEHAISENRTPSLVS
GLPGFIGIGASTNYCTVTLIAAATGSITCTAQNGMPGRFNGKIITLNRTAEGLWSCTSDLDSQYKPGKCL

Nucleotide


Download         Length: 453 bp        

>NTDB_id=181640 PS273GM_RS02680 WP_335743695.1 594782..595234(+) (pilA/pilAII) [Stutzerimonas stutzeri strain 273]
TTGCCTGCCTTTTACTTGGAGAAAAACATGAAGCCCGCAAAAGGATCGTGCCGCGGCTTTTCTCTGATTGAGTTGATGAT
CGTGCTATCCATCATCGGAGTTCTTTCGACCATCGCATTTGCCGCCTATCAGAACCACACCGTGCGCACGACAGCCGCTG
CCGCCTTGGCCGAAATCACTCCGGCAAAGGCCGCGTTCGAGCACGCCATCAGCGAAAATCGCACGCCTTCACTGGTGTCC
GGCTTGCCGGGATTTATCGGTATCGGCGCGAGCACAAACTATTGCACGGTAACGCTAATAGCAGCGGCGACGGGATCGAT
CACCTGCACCGCTCAGAACGGAATGCCAGGGCGGTTCAATGGCAAAATCATTACCCTTAACCGCACGGCGGAGGGCTTGT
GGAGCTGCACCAGTGATCTGGACAGCCAATATAAGCCAGGGAAATGCCTCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(48-149)

Prokaryotic N-terminal methylation motif (N_methyl)

(16-40)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAII Pseudomonas stutzeri DSM 10701

81.56

94

0.767
  pilA/pilAI Pseudomonas stutzeri DSM 10701

63.636

88

0.56
  pilA Pseudomonas aeruginosa PAK

44.595

98.667

0.44
  comP Acinetobacter baylyi ADP1

37.162

98.667

0.367

Multiple sequence alignment