Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   BSA41_RS05230 Genome accession   NZ_CP015610
Coordinates   979717..980178 (-) Length   153 a.a.
NCBI ID   WP_041084999.1    Uniprot ID   -
Organism   Bacillus safensis strain U41     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 974717..985178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA41_RS05210 (BSA41_05060) - 975320..976204 (+) 885 WP_075611335.1 cation diffusion facilitator family transporter -
  BSA41_RS19655 - 976270..976422 (-) 153 WP_175297139.1 hypothetical protein -
  BSA41_RS05215 (BSA41_05065) - 976724..977263 (+) 540 WP_075611336.1 RDD family protein -
  BSA41_RS05220 (BSA41_05070) - 977388..978698 (+) 1311 WP_075612374.1 MFS transporter -
  BSA41_RS05225 (BSA41_05075) - 978772..979680 (+) 909 WP_024424709.1 chemotaxis protein -
  BSA41_RS05230 (BSA41_05080) kre 979717..980178 (-) 462 WP_041084999.1 YkyB family protein Regulator
  BSA41_RS05235 (BSA41_05085) - 980368..981273 (-) 906 WP_073979429.1 helix-turn-helix domain-containing protein -
  BSA41_RS05240 (BSA41_05090) - 981387..982283 (+) 897 WP_034623334.1 DMT family transporter -
  BSA41_RS05245 (BSA41_05095) - 982467..982682 (-) 216 WP_039178134.1 hypothetical protein -
  BSA41_RS05250 (BSA41_05100) - 982878..984155 (-) 1278 WP_024426859.1 MFS transporter -
  BSA41_RS05255 (BSA41_05105) - 984229..984726 (-) 498 WP_039178139.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17681.27 Da        Isoelectric Point: 10.2452

>NTDB_id=181375 BSA41_RS05230 WP_041084999.1 979717..980178(-) (kre) [Bacillus safensis strain U41]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQAYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=181375 BSA41_RS05230 WP_041084999.1 979717..980178(-) (kre) [Bacillus safensis strain U41]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAACCCCAAGTTTCTTTATCTTTTGAAAAAACGCGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAGTATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACGAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAAATACTTCAAGCGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTACACAAAACCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765

Multiple sequence alignment