Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   A4H00_RS00285 Genome accession   NZ_CP015196
Coordinates   61272..61880 (-) Length   202 a.a.
NCBI ID   WP_082815563.1    Uniprot ID   -
Organism   Streptococcus marmotae strain HTS5     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 56272..66880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4H00_RS00260 - 56795..57559 (-) 765 WP_067085866.1 ABC transporter ATP-binding protein -
  A4H00_RS00265 - 57559..58509 (-) 951 WP_067085868.1 branched-chain amino acid ABC transporter permease -
  A4H00_RS00270 - 58512..59399 (-) 888 WP_067085871.1 branched-chain amino acid ABC transporter permease -
  A4H00_RS00275 - 59546..60730 (-) 1185 WP_067085881.1 ABC transporter substrate-binding protein -
  A4H00_RS00280 - 60819..61094 (-) 276 WP_067085883.1 YlbG family protein -
  A4H00_RS00285 clpP 61272..61880 (-) 609 WP_082815563.1 ATP-dependent Clp protease proteolytic subunit Regulator
  A4H00_RS00290 - 62036..63694 (-) 1659 WP_067085888.1 KAP family P-loop NTPase fold protein -
  A4H00_RS00295 upp 64134..64763 (-) 630 WP_067085890.1 uracil phosphoribosyltransferase -
  A4H00_RS00300 - 64863..66473 (-) 1611 WP_067085893.1 glycoside hydrolase family 13 protein -
  A4H00_RS12395 - 66502..66705 (-) 204 WP_418080449.1 DapH/DapD/GlmU-related protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22337.68 Da        Isoelectric Point: 5.2955

>NTDB_id=177407 A4H00_RS00285 WP_082815563.1 61272..61880(-) (clpP) [Streptococcus marmotae strain HTS5]
MEKENTMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLA
IVDTMNFIKADVQTIVMGMAASMGTIIASSGAKGKRFMLPHAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKIL
ADNSGKSIKQIHKDAERDYWMSAKETLEYGFIDQIMENNQLK

Nucleotide


Download         Length: 609 bp        

>NTDB_id=177407 A4H00_RS00285 WP_082815563.1 61272..61880(-) (clpP) [Streptococcus marmotae strain HTS5]
ATCGAAAAGGAGAATACTATGATTCCTGTAGTTATTGAACAAACTAGCCGTGGGGAACGCTCGTATGATATTTACTCACG
CCTCTTAAAAGATCGTATTATCATGTTGACAGGCCCAGTTGAAGACAATATGGCAAATTCTGTCATTGCCCAGTTGCTCT
TCCTTGATGCGCAAGATCCAACCAAGGATATTTATCTCTATGTCAATACTCCTGGTGGTTCTGTCTCAGCAGGTCTTGCT
ATTGTGGACACCATGAACTTTATCAAGGCAGATGTCCAAACCATTGTTATGGGGATGGCAGCTAGCATGGGAACCATTAT
TGCGTCGAGTGGTGCTAAGGGCAAACGCTTCATGTTGCCACATGCAGAGTACATGATTCACCAACCAATGGGTGGTACTG
GTGGTGGTACGCAACAGACTGATATGGCGATTGCAGCTGAGCACCTATTAAAAACCCGTAACACACTAGAAAAAATTCTA
GCAGACAATTCAGGAAAAAGTATCAAACAAATCCACAAAGATGCAGAACGTGATTACTGGATGAGTGCTAAAGAAACCCT
TGAATATGGCTTTATTGACCAGATTATGGAAAATAATCAGTTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(17-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes JRS4

93.367

97.03

0.906
  clpP Streptococcus pyogenes MGAS315

93.367

97.03

0.906
  clpP Streptococcus pneumoniae R6

92.308

96.535

0.891
  clpP Streptococcus pneumoniae TIGR4

92.308

96.535

0.891
  clpP Streptococcus pneumoniae Rx1

92.308

96.535

0.891
  clpP Streptococcus pneumoniae D39

92.308

96.535

0.891
  clpP Streptococcus mutans UA159

88.119

100

0.881
  clpP Streptococcus thermophilus LMD-9

90.816

97.03

0.881
  clpP Streptococcus thermophilus LMG 18311

90.816

97.03

0.881
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

86.735

97.03

0.842
  clpP Lactococcus lactis subsp. cremoris KW2

86.224

97.03

0.837
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

95.545

0.554
  clpP Bacillus subtilis subsp. subtilis str. 168

56.633

97.03

0.55

Multiple sequence alignment