Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AYJ58_RS04885 Genome accession   NZ_CP015194
Coordinates   1092890..1094161 (-) Length   423 a.a.
NCBI ID   WP_106649216.1    Uniprot ID   -
Organism   Shewanella sp. Pdp11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1087890..1099161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYJ58_RS04850 (AYJ58_04765) - 1088023..1088949 (+) 927 WP_106649211.1 exopolyphosphatase -
  AYJ58_RS04855 (AYJ58_04770) - 1089018..1089554 (-) 537 WP_106649212.1 thioredoxin family protein -
  AYJ58_RS04860 (AYJ58_04775) mutT 1089785..1090177 (-) 393 WP_106649213.1 8-oxo-dGTP diphosphatase MutT -
  AYJ58_RS04865 (AYJ58_04780) yacG 1090257..1090466 (-) 210 WP_006083355.1 DNA gyrase inhibitor YacG -
  AYJ58_RS04870 (AYJ58_04785) zapD 1090540..1091274 (-) 735 WP_106649214.1 cell division protein ZapD -
  AYJ58_RS04875 (AYJ58_04790) coaE 1091267..1091884 (-) 618 WP_063884698.1 dephospho-CoA kinase -
  AYJ58_RS04880 (AYJ58_04795) pilD 1091924..1092850 (-) 927 WP_106649215.1 A24 family peptidase Machinery gene
  AYJ58_RS04885 (AYJ58_04800) pilC 1092890..1094161 (-) 1272 WP_106649216.1 type II secretion system F family protein Machinery gene
  AYJ58_RS04890 (AYJ58_04805) pilB 1094312..1096024 (-) 1713 WP_106649217.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AYJ58_RS21865 (AYJ58_04810) - 1096749..1097927 (+) 1179 WP_198555596.1 O-antigen ligase family protein -
  AYJ58_RS22110 (AYJ58_04815) - 1097975..1098412 (-) 438 WP_106649219.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46092.30 Da        Isoelectric Point: 10.2290

>NTDB_id=177387 AYJ58_RS04885 WP_106649216.1 1092890..1094161(-) (pilC) [Shewanella sp. Pdp11]
MATATTTRKPRTKKAEQKSQPKIYTFEWKGVNRDGKKTAGELRGATAAEIRSQLKSQGVNPKSVRKQSSALFKLGDPKIT
PMDIAVMTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLGNILSEIQSGIPLSDAMRPHRRYFDELYVDLVAAGEHSG
SLDLVFDRVATYREKSEALKSKIKKAMFYPAAVVMVAILVTALLLLFVVPQFEDIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLAAIVGGVFLFVRAHRNSQMVRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMQTTGLFPDMLVQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKVVSG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=177387 AYJ58_RS04885 WP_106649216.1 1092890..1094161(-) (pilC) [Shewanella sp. Pdp11]
ATGGCTACGGCAACGACAACAAGAAAGCCTCGCACCAAGAAAGCCGAGCAAAAGAGCCAACCAAAAATCTATACCTTCGA
ATGGAAAGGTGTAAATCGCGACGGCAAGAAAACAGCAGGTGAACTCAGGGGCGCAACCGCCGCTGAAATCCGTAGCCAAT
TGAAATCCCAAGGCGTAAATCCAAAGAGCGTGCGTAAACAGTCTTCTGCGCTATTTAAACTAGGGGATCCGAAAATCACC
CCTATGGATATTGCTGTAATGACCCGCCAAATTGCGACTATGCTAGCGGCGGGTGTACCTTTAGTGACAACTATTGAGCT
ACTCGGCCGCGGTCACGAAAAAGCTAAAATGCGAGAACTATTAGGAAATATCCTTAGCGAAATTCAATCGGGTATTCCTT
TATCCGATGCTATGCGTCCCCATAGACGTTACTTCGACGAACTTTATGTTGACCTAGTTGCAGCCGGTGAACATTCTGGT
TCACTAGACTTGGTTTTCGATCGCGTAGCGACCTACAGAGAAAAATCAGAAGCACTGAAATCCAAAATAAAGAAGGCCAT
GTTCTATCCTGCTGCCGTTGTCATGGTAGCCATTTTAGTCACGGCTTTGTTACTCTTATTTGTCGTACCTCAATTCGAAG
ATATATTTAAAGGCTTTGGTGCTGAACTGCCCGCCTTTACTCAATTAGTACTGCATATTTCCCGCGGCTTACAATCCTCT
TGGTATATCTTTTTAGCCGCCATTGTTGGGGGCGTATTTTTGTTCGTACGGGCGCACCGAAACTCACAAATGGTGCGAGA
TAGAGTAGACGAAGCTGTGCTTAAAATCCCAGCCATTGGGCCCATTTTACATAAAGGGGCCATGGCTCGATTCGCTCGTA
CTTTAGCAACCACTTTCGCTGCGGGCGTGCCGTTGATTGACGGTCTAGAATCCGCCGCAGGCGCATCGGGTAATGCAGTC
TATCGAAAAGCGATTTTAAAAATTCGTCAAGAAGTGATGGCGGGGATGCAGATGAATGTGGCTATGCAGACCACTGGACT
TTTCCCCGACATGTTAGTGCAAATGGTGATGATAGGCGAAGAATCAGGTTCACTAGATAACATGCTCAATAAAGTCTCTA
CTATCTACGAAATGCAAGTAGACGATGCCGTAGATGGCTTATCAAGCCTGATAGAACCGATTATGATGGTGGTAATCGGT
ACTGTCGTCGGCGGATTAATTGTTGCTATGTACTTGCCAATCTTCCAGATGGGTAAAGTTGTTAGCGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

93.617

0.52
  pilC Legionella pneumophila strain ERS1305867

49.505

95.508

0.473
  pilC Acinetobacter baumannii D1279779

50.251

94.09

0.473
  pilC Acinetobacter baylyi ADP1

49.622

93.853

0.466
  pilC Vibrio cholerae strain A1552

47.236

94.09

0.444
  pilC Vibrio campbellii strain DS40M4

44.828

95.981

0.43
  pilG Neisseria meningitidis 44/76-A

41.935

95.272

0.4
  pilG Neisseria gonorrhoeae MS11

41.935

95.272

0.4

Multiple sequence alignment