Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   A4U85_RS01475 Genome accession   NZ_CP015121
Coordinates   316652..317392 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain ab736     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 311652..322392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4U85_RS01460 (A4U85_01445) ponA 312240..314795 (-) 2556 WP_000736672.1 penicillin-binding protein PBP1a -
  A4U85_RS01465 (A4U85_01450) pilM 314956..316014 (+) 1059 WP_005143496.1 pilus assembly protein PilM Machinery gene
  A4U85_RS01470 (A4U85_01455) - 316014..316655 (+) 642 Protein_277 PilN domain-containing protein -
  A4U85_RS01475 (A4U85_01460) pilO 316652..317392 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  A4U85_RS01480 (A4U85_01465) pilP 317403..317930 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  A4U85_RS01485 (A4U85_01470) pilQ 317993..320158 (+) 2166 WP_001017037.1 type IV pilus secretin PilQ family protein Machinery gene
  A4U85_RS01490 (A4U85_01475) aroK 320170..320739 (+) 570 WP_000643712.1 shikimate kinase AroK -
  A4U85_RS01495 (A4U85_01480) aroB 320768..321850 (+) 1083 WP_001194003.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=176883 A4U85_RS01475 WP_000076101.1 316652..317392(+) (pilO) [Acinetobacter baumannii strain ab736]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=176883 A4U85_RS01475 WP_000076101.1 316652..317392(+) (pilO) [Acinetobacter baumannii strain ab736]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAAAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment