Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AMD27_RS14620 Genome accession   NZ_CP015110
Coordinates   3057250..3059427 (-) Length   725 a.a.
NCBI ID   WP_067661859.1    Uniprot ID   A0A143G6Z5
Organism   Acinetobacter sp. TGL-Y2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3052250..3064427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD27_RS14605 (AMD27_14605) - 3054698..3055555 (-) 858 WP_067661853.1 hypothetical protein -
  AMD27_RS14610 (AMD27_14610) aroB 3055566..3056645 (-) 1080 WP_067661855.1 3-dehydroquinate synthase -
  AMD27_RS14615 (AMD27_14615) aroK 3056671..3057213 (-) 543 WP_067661857.1 shikimate kinase AroK -
  AMD27_RS14620 (AMD27_14620) pilQ 3057250..3059427 (-) 2178 WP_067661859.1 type IV pilus secretin PilQ Machinery gene
  AMD27_RS14625 (AMD27_14625) comL 3059447..3059941 (-) 495 WP_067661861.1 pilus assembly protein PilP Machinery gene
  AMD27_RS14630 (AMD27_14630) comO 3059974..3060705 (-) 732 WP_067661862.1 type 4a pilus biogenesis protein PilO Machinery gene
  AMD27_RS14635 (AMD27_14635) pilN 3060702..3061325 (-) 624 WP_067661864.1 PilN domain-containing protein Machinery gene
  AMD27_RS14640 (AMD27_14640) comM 3061325..3062383 (-) 1059 WP_067661866.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 725 a.a.        Molecular weight: 79161.50 Da        Isoelectric Point: 5.1602

>NTDB_id=176721 AMD27_RS14620 WP_067661859.1 3057250..3059427(-) (pilQ) [Acinetobacter sp. TGL-Y2]
MKNSVENFWGRDHQSMNSMLRQFALATVSIAVMQVASAQMTMTNVIPMQIPGQGTEVRVMFNGLPPQPQAYQLDNPARLV
LDFNQTRQALNQSNIPVSTSEASSVEVASDDQRSRLTINLKQKGDYTTRVEGNMFILKINNQASSTLASLAVPEYKQSQG
LTDIGFQRGSAGEGQVILNLQGANTPVDVQQQGSKVVVRFLGNKIPAHLIRRLNVNDFATPVSNVDAYNDGANGVITIQS
TGSYEYMAFQAEDKLTISLKRPEEKKGIKNTVASTRYVGNKISLDFQDIEVRRVLQLLADFTGINMVASDTVQGNITLRL
KDVPWDQALDIVLKTKNLDKRRNGSVIWIAPVTELIKVEEDEAKAIAQSVKLSPLQTEYIQLNYAKVTDIEKLITQGKNS
SNSGSTNNAGGGTDPLGDSVGSLLSPRGTVSFDPRTNTLIVNDTAQKIDQIRKMIDLLDVSVKQVMIEARIVRATTDFTK
EMGVKWGILSQGITRNNDLLVGGSDQTLWDLKNPDDDGKYDIQRPDNLNVDLGVANAAGKIAFGLINMSDFMLDLELSAL
QADGYGEVISTPKVLTADKQQARVASGQQIPYQTTETAGGTATATTSFKDALLSLDVTPSITPDGKVQMKLNITSDSPAG
TAPNGEIILNKNEIDTNVLVDNGETVVLGGIFEQETRNQQTKVPFLGDLPAIGRLFRRDSKSESKRELLIFVTPRIVNDS
QSRNH

Nucleotide


Download         Length: 2178 bp        

>NTDB_id=176721 AMD27_RS14620 WP_067661859.1 3057250..3059427(-) (pilQ) [Acinetobacter sp. TGL-Y2]
ATGAAAAATAGTGTAGAAAATTTTTGGGGTAGGGATCATCAGTCTATGAACAGTATGTTACGTCAATTTGCCTTGGCAAC
CGTATCAATCGCTGTGATGCAAGTTGCATCTGCGCAAATGACCATGACCAATGTGATACCCATGCAAATTCCAGGACAAG
GCACAGAGGTCCGTGTGATGTTCAATGGTTTACCTCCACAGCCTCAAGCTTACCAACTGGATAACCCGGCACGTTTAGTC
TTGGATTTTAATCAAACACGTCAAGCCTTAAATCAAAGCAATATTCCCGTGTCGACCTCTGAAGCTTCATCGGTTGAAGT
GGCGTCGGATGATCAGCGCTCGCGCTTAACTATCAATTTAAAACAAAAAGGTGATTACACCACGCGCGTTGAAGGCAACA
TGTTTATTTTGAAAATAAATAACCAGGCTTCGAGCACTTTAGCGAGTCTCGCAGTACCTGAATATAAACAAAGTCAAGGA
TTGACCGACATTGGTTTCCAGCGCGGCAGTGCGGGTGAAGGACAAGTTATTTTGAATTTGCAAGGTGCGAACACCCCTGT
CGATGTCCAACAGCAAGGCAGTAAAGTCGTAGTGCGCTTTTTGGGCAATAAAATCCCAGCACACTTAATTCGCCGTTTAA
ACGTGAATGATTTCGCAACACCTGTATCTAATGTGGATGCCTATAACGATGGTGCCAATGGTGTGATTACCATTCAGTCT
ACGGGAAGCTATGAGTACATGGCGTTTCAAGCTGAAGATAAGTTGACCATCAGTTTAAAACGTCCTGAAGAGAAAAAAGG
CATTAAAAACACTGTCGCATCGACGCGTTATGTGGGTAATAAAATTTCACTCGACTTCCAAGACATTGAAGTTCGACGTG
TATTGCAGTTATTGGCAGATTTTACTGGCATTAATATGGTGGCATCAGACACTGTTCAAGGCAATATTACCTTGCGTTTG
AAAGATGTGCCTTGGGATCAAGCTTTAGATATTGTTTTGAAGACCAAGAATTTAGACAAACGCCGTAACGGCAGTGTGAT
CTGGATTGCGCCTGTGACTGAGCTCATTAAAGTTGAGGAAGATGAAGCCAAAGCCATTGCACAAAGTGTGAAATTGTCAC
CCCTGCAAACTGAATATATCCAGCTAAACTACGCTAAGGTTACAGATATTGAAAAGCTGATTACCCAAGGTAAAAACAGC
TCAAATTCTGGAAGTACAAATAATGCAGGTGGAGGCACTGATCCACTCGGTGATAGTGTGGGTTCGCTGTTGAGTCCACG
GGGTACAGTTTCATTTGACCCACGTACCAACACCTTAATTGTGAATGACACAGCACAAAAAATTGACCAAATCCGTAAAA
TGATTGATTTACTGGATGTCTCTGTTAAACAGGTGATGATTGAAGCCCGTATTGTCCGTGCAACCACCGATTTCACCAAA
GAGATGGGTGTGAAATGGGGTATTTTGTCTCAAGGCATTACGCGCAACAATGATCTGTTGGTCGGTGGAAGCGATCAAAC
CTTATGGGACTTAAAAAACCCAGATGATGATGGTAAATATGATATTCAGCGCCCAGATAATTTAAATGTGGACCTAGGTG
TTGCCAATGCTGCGGGTAAAATTGCCTTTGGTCTGATCAATATGTCGGACTTTATGCTGGATTTAGAACTCTCTGCGCTA
CAAGCAGATGGCTATGGCGAAGTAATTTCAACGCCAAAAGTACTCACGGCAGATAAACAACAGGCTAGAGTTGCCTCGGG
TCAACAAATTCCGTATCAAACCACGGAAACTGCAGGTGGGACAGCCACTGCAACCACATCATTTAAGGACGCGCTGCTCA
GCTTAGACGTGACCCCAAGTATTACCCCAGATGGCAAGGTTCAAATGAAACTGAACATTACCAGTGACTCCCCCGCAGGC
ACTGCACCGAATGGTGAAATTATTCTGAACAAGAATGAAATTGACACCAATGTGTTGGTGGATAACGGCGAAACTGTGGT
TTTGGGTGGGATTTTTGAACAAGAAACCCGTAACCAACAAACCAAAGTGCCTTTTTTAGGTGATTTGCCTGCAATTGGAC
GTTTATTCCGCCGTGATTCAAAATCTGAAAGTAAGCGTGAGTTATTAATCTTTGTGACACCAAGAATTGTTAATGACAGT
CAATCTAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(308-351)

Bacterial type II/III secretion system short domain (Secretin_N)

(378-464)

Bacterial type II and III secretion system protein (Secretin)

(559-717)

AMIN domain (AMIN)

(56-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143G6Z5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

72.376

99.862

0.723
  pilQ Acinetobacter baumannii strain A118

72.376

99.862

0.723
  comQ Acinetobacter baylyi ADP1

71.489

98.207

0.702
  pilQ Pseudomonas aeruginosa PAK

38.255

100

0.393

Multiple sequence alignment