Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AMD27_RS14625 Genome accession   NZ_CP015110
Coordinates   3059447..3059941 (-) Length   164 a.a.
NCBI ID   WP_067661861.1    Uniprot ID   -
Organism   Acinetobacter sp. TGL-Y2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3054447..3064941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD27_RS14605 (AMD27_14605) - 3054698..3055555 (-) 858 WP_067661853.1 hypothetical protein -
  AMD27_RS14610 (AMD27_14610) aroB 3055566..3056645 (-) 1080 WP_067661855.1 3-dehydroquinate synthase -
  AMD27_RS14615 (AMD27_14615) aroK 3056671..3057213 (-) 543 WP_067661857.1 shikimate kinase AroK -
  AMD27_RS14620 (AMD27_14620) pilQ 3057250..3059427 (-) 2178 WP_067661859.1 type IV pilus secretin PilQ Machinery gene
  AMD27_RS14625 (AMD27_14625) comL 3059447..3059941 (-) 495 WP_067661861.1 pilus assembly protein PilP Machinery gene
  AMD27_RS14630 (AMD27_14630) comO 3059974..3060705 (-) 732 WP_067661862.1 type 4a pilus biogenesis protein PilO Machinery gene
  AMD27_RS14635 (AMD27_14635) pilN 3060702..3061325 (-) 624 WP_067661864.1 PilN domain-containing protein Machinery gene
  AMD27_RS14640 (AMD27_14640) comM 3061325..3062383 (-) 1059 WP_067661866.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18066.91 Da        Isoelectric Point: 8.8654

>NTDB_id=176722 AMD27_RS14625 WP_067661861.1 3059447..3059941(-) (comL) [Acinetobacter sp. TGL-Y2]
MLVILTGCESRIDAVNQEMANIRSQAPLPIEPAPVFNPVPTFNYSAHQLRSPVLPNSLAKELKVMSGKRVYPNFARPPQP
LESYALESLNLKGSMKNANGRILALIQTPDGEIEKVQRGSYIGVNQGRIVNITPTRIDLLEIVPDGRDGYIERPRSLVLI
GPVD

Nucleotide


Download         Length: 495 bp        

>NTDB_id=176722 AMD27_RS14625 WP_067661861.1 3059447..3059941(-) (comL) [Acinetobacter sp. TGL-Y2]
ATGTTGGTGATCTTAACCGGCTGTGAGTCACGCATTGATGCAGTGAATCAGGAAATGGCGAATATTCGTAGTCAGGCTCC
TTTGCCGATTGAGCCAGCACCAGTATTTAATCCAGTGCCGACCTTTAACTACTCAGCACATCAACTACGTAGCCCAGTGT
TGCCAAATTCACTCGCGAAAGAGTTAAAGGTCATGTCTGGCAAACGCGTTTACCCAAACTTTGCTCGACCACCACAGCCT
TTAGAAAGTTATGCCCTTGAAAGTTTAAACCTCAAAGGTAGTATGAAAAATGCGAACGGTCGAATTTTGGCGCTGATTCA
AACGCCTGATGGTGAAATTGAGAAAGTCCAACGCGGCAGTTATATAGGCGTTAATCAAGGTCGTATTGTCAATATTACGC
CGACACGTATTGATCTATTGGAAATCGTGCCAGATGGTAGAGATGGTTATATCGAAAGACCACGAAGTTTGGTTTTGATT
GGTCCAGTGGATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(16-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Acinetobacter baylyi ADP1

76.582

96.341

0.738
  pilP Acinetobacter baumannii D1279779

75.472

96.951

0.732

Multiple sequence alignment