Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   A2G56_RS09765 Genome accession   NZ_CP014835
Coordinates   2133937..2134644 (+) Length   235 a.a.
NCBI ID   WP_062712133.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2128937..2139644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS09745 - 2130698..2131348 (-) 651 WP_062712123.1 amino acid ABC transporter permease -
  A2G56_RS09750 - 2131357..2132055 (-) 699 WP_062712127.1 amino acid ABC transporter permease -
  A2G56_RS09755 - 2132075..2132902 (-) 828 WP_062712129.1 transporter substrate-binding domain-containing protein -
  A2G56_RS09760 - 2132919..2133701 (-) 783 WP_062712131.1 amino acid ABC transporter ATP-binding protein -
  A2G56_RS09765 vicR 2133937..2134644 (+) 708 WP_062712133.1 response regulator YycF Regulator
  A2G56_RS09770 vicK 2134637..2135983 (+) 1347 WP_062712138.1 cell wall metabolism sensor histidine kinase VicK Regulator
  A2G56_RS09775 vicX 2135985..2136794 (+) 810 WP_062712141.1 MBL fold metallo-hydrolase Regulator
  A2G56_RS09780 rnc 2136930..2137631 (+) 702 WP_099091487.1 ribonuclease III -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26872.75 Da        Isoelectric Point: 4.8087

>NTDB_id=174504 A2G56_RS09765 WP_062712133.1 2133937..2134644(+) (vicR) [Streptococcus halotolerans strain HTS9]
MKTILVVDDERPISDIIKFNLSKEGYNIETAFDGNEAVQKFEAVKPDLVILDLMLPGIDGLEVAKEIRKTSHTPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAQLRRVETIETVAEESLQSSPTEIEIGNLQILPEAFIAKKNGEEVEL
THREFELLYHLAQHIGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIETTPSRPEYILTRRGVGYFMKAHD

Nucleotide


Download         Length: 708 bp        

>NTDB_id=174504 A2G56_RS09765 WP_062712133.1 2133937..2134644(+) (vicR) [Streptococcus halotolerans strain HTS9]
ATGAAAACAATTCTTGTCGTGGATGATGAGAGACCCATCTCAGATATTATAAAATTTAATCTTAGCAAGGAAGGATATAA
CATTGAGACAGCTTTCGATGGTAATGAAGCAGTTCAAAAATTCGAAGCTGTTAAGCCCGACTTGGTTATCCTAGACTTGA
TGCTTCCAGGTATCGATGGTCTTGAAGTAGCTAAAGAAATTCGTAAAACAAGCCATACGCCTATTATTATGTTGTCAGCT
AAGGATTCTGAATTTGATAAAGTGATTGGTTTAGAAATTGGTGCTGACGATTATGTCACAAAACCTTTTTCTAATCGTGA
GTTACTGGCACGTGTTAAAGCGCAATTACGCCGTGTTGAAACCATTGAGACAGTGGCCGAAGAGTCGCTTCAATCCTCAC
CAACAGAAATTGAAATTGGTAACCTTCAGATTTTACCAGAAGCGTTTATTGCTAAAAAGAATGGTGAAGAAGTTGAATTA
ACACATCGCGAGTTCGAATTGCTCTACCATTTGGCGCAACATATTGGTCAGGTGATGACGCGTGAACACTTATTGGAAAC
AGTTTGGGGTTATGACTATTTTGGTGATGTTCGCACAGTTGATGTAACCATTCGTCGTTTGCGTGAAAAAATCGAAACAA
CACCAAGTCGACCAGAATATATCTTAACTCGCCGTGGAGTGGGTTATTTTATGAAAGCTCATGACTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

80

100

0.8
  micA Streptococcus pneumoniae Cp1015

74.786

99.574

0.745
  covR Lactococcus lactis subsp. lactis strain DGCC12653

42.857

98.298

0.421
  covR Streptococcus salivarius strain HSISS4

40.693

98.298

0.4
  scnR Streptococcus mutans UA159

37.288

100

0.374

Multiple sequence alignment