Detailed information NTG0174478

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BFL23_RS20290
• Genome accession: NZ_CP018245
• Coordinates: 3628760..3629752 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 472
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3623760..3634752

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BFL23_RS20265 (BFL23_20005)	pphB	3625122..3625778 (+)	657	WP_001141350.1	protein-serine/threonine phosphatase	-
BFL23_RS20270 (BFL23_20010)	-	3625819..3626055 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
BFL23_RS20275 (BFL23_20015)	-	3626066..3627493 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
BFL23_RS20280 (BFL23_20020)	-	3627493..3628086 (-)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
BFL23_RS20285 (BFL23_20025)	-	3628233..3628640 (+)	408	WP_000175365.1	MarR family transcriptional regulator	-
BFL23_RS20290 (BFL23_20030)	rpoS	3628760..3629752 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BFL23_RS20295 (BFL23_20035)	nlpD	3629815..3630909 (-)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
BFL23_RS20300 (BFL23_20040)	pcm	3631094..3631720 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BFL23_RS20305 (BFL23_20045)	surE	3631714..3632475 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BFL23_RS20310 (BFL23_20050)	truD	3632456..3633505 (-)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
BFL23_RS20315 (BFL23_20055)	ispF	3633502..3633981 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BFL23_RS20320 (BFL23_20060)	ispD	3633981..3634691 (-)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=174478 BFL23_RS20290 WP_000081550.1 3628760..3629752(-) (rpoS) [Escherichia coli strain 472]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=174478 BFL23_RS20290 WP_000081550.1 3628760..3629752(-) (rpoS) [Escherichia coli strain 472]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715