Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   A2G56_RS05805 Genome accession   NZ_CP014835
Coordinates   1288979..1290952 (-) Length   657 a.a.
NCBI ID   WP_062710258.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1283979..1295952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS05785 amiF 1284476..1285408 (-) 933 WP_062710243.1 ATP-binding cassette domain-containing protein Regulator
  A2G56_RS05790 amiE 1285408..1286475 (-) 1068 WP_062710246.1 ABC transporter ATP-binding protein Regulator
  A2G56_RS05795 amiD 1286484..1287410 (-) 927 WP_062710251.1 oligopeptide ABC transporter permease OppC Regulator
  A2G56_RS05800 amiC 1287410..1288909 (-) 1500 WP_062710254.1 ABC transporter permease Regulator
  A2G56_RS05805 amiA 1288979..1290952 (-) 1974 WP_062710258.1 peptide ABC transporter substrate-binding protein Regulator
  A2G56_RS05810 pbp3 1291644..1292873 (+) 1230 WP_062710260.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  A2G56_RS10660 - 1292887..1293039 (-) 153 WP_157761199.1 hypothetical protein -
  A2G56_RS05815 sufB 1293196..1294605 (-) 1410 WP_062710263.1 Fe-S cluster assembly protein SufB -
  A2G56_RS05820 sufU 1294858..1295298 (-) 441 WP_062710266.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 72594.67 Da        Isoelectric Point: 4.6985

>NTDB_id=174478 A2G56_RS05805 WP_062710258.1 1288979..1290952(-) (amiA) [Streptococcus halotolerans strain HTS9]
MTSKKKLMVLAGVALVSTSVLAACGNQSGSKKSGDMSYSYVYPEEPKTLDYTTANASGTSDLTSNFVDGLLENDRYGNLV
PSLAKDWTVSKDGLTYTYKLRDDAYWYTADGEEYAPVTAEDFVTGLKHAADEKADALYVVEDSVKGLKDYLDGKIKDFKE
VGVKAIDEHTVQYTLNKPESFWNSKTTYGILFPVNGEFLKSKGKNFGAPTDPSSLLYNGPYTLSAITSKSSVEMTKNENY
WDAKNVHITNVKLTYSDGSDPDALFNNFKDGSYSYARLYPNQPSYKKASKDFGKNIYYTQQNASTFMYFFNVNRTANKMT
SKTPEQMEDTKAALQNKDFRQAVTFAFDRASWNSQVSGEEAKDKALRNTLVPPTFVQIDGKDFGDTVTSELEKLGDEWKG
VDLTDAQNGLYNPEKAKAELEKAKAALGSDVTYPIQIDTVVSQTDELGVQRAKSLKQSVEANLGKENVQVNVLEKSEEEY
LAATYEAESAEQMDYDITISGWSPDYLDPSSYLDIFSTEEGAASTMRLGVDAKNKELIDKVGLSEYQAQLDKAAAINDDV
DARYTEYAKAQAWLSDSALVIPSVSLGGAPSVSRIQPFSAPFSWVGTKGGGTNYKYQKLLDKPVTAEAYQKALESWKAKR
EKSNEKATKELADHVAK

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=174478 A2G56_RS05805 WP_062710258.1 1288979..1290952(-) (amiA) [Streptococcus halotolerans strain HTS9]
ATGACAAGTAAAAAGAAATTAATGGTGTTAGCTGGTGTTGCACTTGTTTCGACATCAGTTCTGGCAGCTTGTGGCAATCA
ATCTGGTTCAAAGAAATCAGGCGATATGTCATATAGCTATGTGTATCCAGAAGAACCTAAAACGTTAGATTATACCACAG
CTAATGCAAGTGGAACGAGTGACTTGACGTCTAACTTTGTTGACGGTCTCTTGGAAAATGACCGCTATGGTAACCTGGTT
CCGTCATTAGCTAAGGATTGGACAGTCTCTAAAGATGGATTGACTTATACCTACAAACTGCGCGATGACGCATACTGGTA
CACAGCAGATGGCGAAGAGTACGCTCCAGTAACTGCTGAAGATTTTGTGACAGGATTAAAACATGCTGCTGACGAAAAAG
CTGATGCGCTTTATGTTGTCGAAGATTCTGTTAAAGGTCTGAAAGATTATCTTGATGGAAAAATCAAGGATTTCAAAGAG
GTTGGTGTCAAAGCGATTGATGAACATACAGTTCAATATACCCTTAATAAGCCAGAAAGTTTCTGGAATTCTAAAACAAC
CTACGGTATTCTTTTCCCTGTAAATGGAGAGTTCTTGAAATCTAAAGGGAAAAACTTTGGTGCCCCAACTGATCCATCTA
GTTTATTGTATAACGGTCCATATACCCTAAGTGCCATTACTTCTAAGTCATCTGTAGAGATGACTAAAAATGAGAATTAT
TGGGATGCTAAAAATGTCCATATTACGAATGTCAAGTTGACTTATTCTGATGGTTCTGATCCCGATGCTCTCTTTAACAA
CTTCAAAGATGGTTCATATAGCTATGCTCGTCTGTATCCAAACCAACCAAGCTATAAGAAGGCCTCTAAAGACTTTGGTA
AGAACATCTATTACACTCAACAAAATGCATCAACCTTTATGTATTTCTTCAATGTCAACCGTACTGCCAATAAGATGACT
TCTAAAACACCAGAGCAAATGGAAGATACCAAAGCAGCACTTCAAAACAAGGACTTCCGACAAGCAGTAACCTTTGCCTT
TGACCGTGCTTCATGGAATTCACAGGTTTCTGGTGAAGAGGCTAAAGATAAGGCTTTGCGTAACACCCTTGTTCCACCAA
CGTTTGTTCAAATTGATGGTAAAGACTTCGGTGACACAGTTACCAGTGAACTGGAAAAACTTGGCGATGAGTGGAAAGGT
GTTGATCTAACAGACGCTCAAAACGGTCTTTATAATCCAGAAAAAGCAAAAGCAGAACTTGAAAAAGCAAAAGCAGCTCT
TGGAAGTGACGTTACTTATCCTATTCAAATCGACACCGTTGTATCACAGACAGATGAACTTGGTGTGCAACGTGCTAAAT
CATTAAAACAATCTGTAGAAGCTAACCTTGGTAAAGAAAATGTTCAGGTAAATGTTCTTGAAAAATCCGAAGAAGAATAC
CTAGCAGCAACATACGAGGCTGAGTCTGCTGAGCAAATGGACTATGATATTACCATATCTGGTTGGAGCCCAGACTATCT
CGATCCGTCATCCTACTTAGACATCTTCTCTACAGAAGAAGGAGCAGCTTCAACAATGCGATTAGGTGTTGATGCTAAGA
ATAAAGAGCTCATTGATAAGGTTGGTTTAAGCGAATACCAGGCTCAACTTGACAAAGCAGCTGCCATTAATGATGATGTA
GATGCTCGCTATACAGAATATGCCAAAGCTCAGGCATGGTTAAGCGATAGTGCCCTAGTTATTCCATCAGTCTCACTAGG
AGGTGCGCCATCAGTTTCACGTATTCAACCATTTTCAGCACCATTCTCATGGGTTGGTACTAAAGGTGGCGGCACTAATT
ATAAATACCAAAAACTTCTAGATAAGCCAGTTACAGCTGAGGCTTATCAAAAAGCTTTGGAGAGCTGGAAAGCTAAACGC
GAAAAATCAAATGAAAAAGCCACTAAAGAACTGGCTGATCATGTAGCAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

51.75

100

0.518
  amiA3 Streptococcus thermophilus LMG 18311

51.294

100

0.513
  amiA3 Streptococcus thermophilus LMD-9

50.837

100

0.508

Multiple sequence alignment