Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   A2G56_RS05785 Genome accession   NZ_CP014835
Coordinates   1284476..1285408 (-) Length   310 a.a.
NCBI ID   WP_062710243.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1279476..1290408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS05770 - 1280443..1281474 (-) 1032 WP_062710235.1 ABC transporter permease -
  A2G56_RS05775 - 1281485..1282399 (-) 915 WP_062710238.1 ABC transporter permease -
  A2G56_RS05780 - 1282512..1284173 (-) 1662 WP_062710240.1 peptide ABC transporter substrate-binding protein -
  A2G56_RS05785 amiF 1284476..1285408 (-) 933 WP_062710243.1 ATP-binding cassette domain-containing protein Regulator
  A2G56_RS05790 amiE 1285408..1286475 (-) 1068 WP_062710246.1 ABC transporter ATP-binding protein Regulator
  A2G56_RS05795 amiD 1286484..1287410 (-) 927 WP_062710251.1 oligopeptide ABC transporter permease OppC Regulator
  A2G56_RS05800 amiC 1287410..1288909 (-) 1500 WP_062710254.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 35060.18 Da        Isoelectric Point: 5.0577

>NTDB_id=174474 A2G56_RS05785 WP_062710243.1 1284476..1285408(-) (amiF) [Streptococcus halotolerans strain HTS9]
MPEKLVDIKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSSGEIVYDGKVINKKLSKS
DEREMLQKIQMIFQDPAASLNERATVDYIISEGLYNFGLFKDDKDRQDKVAKMMTEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMDPEFIIADEPISALDVSVRAQVLNLLKRMQEEKGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFR
NPIHPYTKSLLSAVPIPDPILERQKELVVYDPEQHDYDTEEPSMVEVLPGHYVWGSPTEISKYKLENPYK

Nucleotide


Download         Length: 933 bp        

>NTDB_id=174474 A2G56_RS05785 WP_062710243.1 1284476..1285408(-) (amiF) [Streptococcus halotolerans strain HTS9]
ATGCCAGAGAAATTAGTTGACATTAAAGATTTGGAAATCTCTTTCGGTGAAGGCAAAAAGAAATTTGTTGCCGTCAAGAA
TGCGAATTTCTTTATCAATAAAGGAGAAACATTCTCTTTAGTAGGAGAGTCAGGTTCTGGGAAAACAACGATTGGTCGGG
CAATCATTGGACTAAATGATACCAGTAGTGGTGAGATTGTCTACGATGGAAAAGTGATTAATAAGAAACTGTCTAAATCA
GATGAGAGAGAAATGCTCCAAAAGATTCAAATGATTTTTCAGGATCCTGCAGCTAGTTTGAATGAACGTGCGACAGTGGA
TTATATCATTTCTGAAGGATTATATAATTTTGGACTTTTTAAAGATGATAAGGACCGTCAAGATAAAGTCGCTAAAATGA
TGACCGAAGTTGGTTTGCTTTCGGAACATTTAACACGCTATCCTCATGAGTTTTCAGGAGGACAACGTCAGCGGATTGGT
ATCGCTCGTGCATTGGTTATGGATCCAGAATTCATTATTGCAGACGAACCGATATCAGCTTTAGATGTTTCCGTTCGAGC
TCAAGTGCTCAATCTTTTAAAACGGATGCAGGAAGAAAAAGGACTAACTTACCTTTTCATTGCACACGATTTATCAGTAG
TAAGATTTATCTCGGATCGAATAGCTGTTATCTATAAGGGTGTTATTGTCGAAGTTGCTGAGACTGAAGAATTGTTCAGA
AATCCAATTCATCCATATACCAAATCCTTATTATCTGCTGTGCCAATTCCAGATCCAATTCTGGAGCGCCAGAAAGAATT
GGTCGTTTATGATCCAGAACAACATGATTATGATACAGAGGAACCAAGCATGGTTGAGGTGTTGCCTGGTCATTACGTTT
GGGGAAGCCCGACGGAAATTTCTAAATATAAGTTAGAAAATCCATACAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

79.085

98.71

0.781
  amiF Streptococcus salivarius strain HSISS4

79.085

98.71

0.781
  amiF Streptococcus thermophilus LMD-9

78.758

98.71

0.777

Multiple sequence alignment