Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   A2G56_RS05800 Genome accession   NZ_CP014835
Coordinates   1287410..1288909 (-) Length   499 a.a.
NCBI ID   WP_062710254.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1282410..1293909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS05780 - 1282512..1284173 (-) 1662 WP_062710240.1 peptide ABC transporter substrate-binding protein -
  A2G56_RS05785 amiF 1284476..1285408 (-) 933 WP_062710243.1 ATP-binding cassette domain-containing protein Regulator
  A2G56_RS05790 amiE 1285408..1286475 (-) 1068 WP_062710246.1 ABC transporter ATP-binding protein Regulator
  A2G56_RS05795 amiD 1286484..1287410 (-) 927 WP_062710251.1 oligopeptide ABC transporter permease OppC Regulator
  A2G56_RS05800 amiC 1287410..1288909 (-) 1500 WP_062710254.1 ABC transporter permease Regulator
  A2G56_RS05805 amiA 1288979..1290952 (-) 1974 WP_062710258.1 peptide ABC transporter substrate-binding protein Regulator
  A2G56_RS05810 pbp3 1291644..1292873 (+) 1230 WP_062710260.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  A2G56_RS10660 - 1292887..1293039 (-) 153 WP_157761199.1 hypothetical protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 56187.26 Da        Isoelectric Point: 10.1522

>NTDB_id=174477 A2G56_RS05800 WP_062710254.1 1287410..1288909(-) (amiC) [Streptococcus halotolerans strain HTS9]
MKKYILMRVLRSLVSIFLVTTLVYTIVYTMVPKSLIFKNDPNYNKMITTPDKKANYENTIFERMGYIDYLTTKELQTKAS
KEYKQVTTKPTATNKNYYQKYLKSTGGKWQLHQFKESKEFYATRDISIIERVWNFYSNLIVVDHPWKIKDASNPDLERYV
RFENDPSVGPALVGSGTKHKYLMYFNSSFPFIHQNIFKLNLGLSYPTYANQPVTRIITQGQGRTLQSEVTFPNGNTRQSA
INMYSRTYLSPSKADSRAKHNFGENDAYTATQNNYSEPSMLKNSFIIGVVGVIIAYAVGLPIGMLMSRYKDGLFDRFSTG
LMTFMLALPSVATIYIIRFVGSNLGLPDSFPNLGASSPLSYVLPALVLGILSVPGIVVWFRRYMVDQQASDYVRFARSKG
LTEAEISQKHLFKNAMVPISNGIPSSIALTIVGATLTETIFAFPGMGKMLIDSVRAANNSMVVGLVFIFTVVSVFALLLG
DLLMTIFDPRIRLTSKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=174477 A2G56_RS05800 WP_062710254.1 1287410..1288909(-) (amiC) [Streptococcus halotolerans strain HTS9]
ATGAAAAAATATATCTTAATGCGTGTTTTGCGATCATTAGTATCTATTTTTTTGGTAACCACCTTGGTCTATACAATTGT
CTATACCATGGTGCCAAAAAGTTTAATTTTTAAAAATGATCCTAACTACAATAAAATGATTACAACCCCGGATAAAAAAG
CCAATTATGAAAATACCATTTTTGAACGGATGGGGTATATCGACTATTTAACCACTAAAGAGCTTCAAACAAAAGCTTCT
AAAGAGTATAAGCAGGTCACAACAAAGCCAACGGCTACCAATAAAAACTATTATCAAAAATATCTGAAATCAACAGGTGG
CAAATGGCAATTGCATCAATTCAAAGAGAGTAAAGAATTTTATGCGACACGTGACATTTCAATCATTGAACGTGTTTGGA
ATTTCTATTCAAACCTCATCGTTGTTGATCATCCTTGGAAAATAAAGGATGCTTCAAATCCTGATTTAGAACGCTATGTT
CGATTTGAAAATGATCCTTCAGTAGGACCAGCTTTAGTCGGTTCGGGAACAAAACACAAATATTTGATGTATTTTAACAG
CAGTTTTCCATTTATTCATCAAAATATTTTTAAACTTAACTTAGGACTGTCGTATCCAACCTATGCCAACCAACCAGTCA
CACGTATTATCACGCAAGGACAAGGAAGAACACTTCAAAGTGAAGTGACATTTCCAAATGGCAATACACGTCAGTCGGCC
ATTAATATGTATTCAAGAACTTATTTGTCACCATCTAAAGCTGATTCGCGCGCGAAGCATAATTTCGGTGAAAACGATGC
TTACACAGCGACGCAGAATAATTATAGCGAACCATCTATGCTCAAAAACTCTTTTATCATTGGTGTTGTAGGGGTTATCA
TTGCCTATGCAGTAGGTCTACCAATCGGTATGCTGATGTCTCGCTATAAAGATGGCCTATTTGATCGCTTCTCAACAGGT
CTCATGACCTTTATGTTGGCCTTACCGAGTGTCGCAACGATTTATATCATCCGTTTTGTTGGGTCAAACTTAGGTCTACC
GGATAGTTTTCCAAATTTAGGTGCTTCTAGTCCATTATCTTATGTGCTACCAGCCCTTGTTTTAGGAATTTTAAGCGTTC
CAGGGATTGTGGTTTGGTTCCGTCGCTATATGGTAGACCAACAGGCTAGTGATTATGTGCGATTTGCTCGCTCTAAAGGT
CTCACAGAGGCAGAAATTTCTCAAAAGCATTTGTTTAAAAATGCTATGGTGCCGATTTCGAACGGTATTCCAAGTTCGAT
TGCTTTAACAATCGTTGGGGCAACCTTAACAGAGACTATTTTTGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTG
TACGTGCAGCTAATAACTCAATGGTTGTTGGGTTGGTCTTTATCTTTACAGTTGTATCTGTTTTTGCTTTACTCTTAGGT
GATCTTTTAATGACCATCTTTGATCCACGTATTCGATTGACTTCAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

62.926

100

0.629
  amiC Streptococcus thermophilus LMG 18311

62.525

100

0.625
  amiC Streptococcus thermophilus LMD-9

62.525

100

0.625

Multiple sequence alignment