Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   A2G56_RS05790 Genome accession   NZ_CP014835
Coordinates   1285408..1286475 (-) Length   355 a.a.
NCBI ID   WP_062710246.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1280408..1291475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS05770 - 1280443..1281474 (-) 1032 WP_062710235.1 ABC transporter permease -
  A2G56_RS05775 - 1281485..1282399 (-) 915 WP_062710238.1 ABC transporter permease -
  A2G56_RS05780 - 1282512..1284173 (-) 1662 WP_062710240.1 peptide ABC transporter substrate-binding protein -
  A2G56_RS05785 amiF 1284476..1285408 (-) 933 WP_062710243.1 ATP-binding cassette domain-containing protein Regulator
  A2G56_RS05790 amiE 1285408..1286475 (-) 1068 WP_062710246.1 ABC transporter ATP-binding protein Regulator
  A2G56_RS05795 amiD 1286484..1287410 (-) 927 WP_062710251.1 oligopeptide ABC transporter permease OppC Regulator
  A2G56_RS05800 amiC 1287410..1288909 (-) 1500 WP_062710254.1 ABC transporter permease Regulator
  A2G56_RS05805 amiA 1288979..1290952 (-) 1974 WP_062710258.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39409.15 Da        Isoelectric Point: 5.0496

>NTDB_id=174475 A2G56_RS05790 WP_062710246.1 1285408..1286475(-) (amiE) [Streptococcus halotolerans strain HTS9]
MEKTDNVILSAKDVVVEFDVRDRVLTAIRGVSIDLIEGEVLAVVGESGSGKSVLTKTFTGMLESNGRIASGSINYRGKEL
SSLKSHKDWEEIRGAKIATIFQDPMTSLDPIKSIGSQITEVIIKHQGKSKSEAKKMAIDYMESVGIPEAAKRFKEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIKLLKDLQAEYSFTTIFITHDLGVVASIADKVAVMYAGDIVE
YGTVEDIFYDPHHPYTWSLLSSLPQLADETGVLFSIPGAPPSLYKPIVGDAFAPRSRYAMQIDFEEEAPKFYVNDNHWAK
TWLLHPDAPDVDKPEMIQDLHSKISQKLGKERVEQ

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=174475 A2G56_RS05790 WP_062710246.1 1285408..1286475(-) (amiE) [Streptococcus halotolerans strain HTS9]
ATGGAAAAAACAGATAATGTTATATTAAGTGCTAAAGATGTTGTTGTTGAATTTGATGTGCGTGATCGTGTTTTGACTGC
CATTAGAGGTGTCTCAATTGACCTTATTGAAGGCGAAGTCCTGGCAGTTGTCGGTGAGTCTGGTTCCGGAAAATCAGTAT
TAACAAAAACATTCACTGGGATGCTAGAAAGTAATGGCCGTATTGCTAGTGGATCGATTAATTACCGTGGAAAAGAGTTA
TCAAGTCTAAAGAGTCATAAGGATTGGGAAGAGATTCGTGGTGCTAAAATTGCCACTATTTTCCAAGATCCAATGACTTC
ATTAGATCCGATTAAGTCAATTGGTAGTCAAATTACAGAAGTCATTATTAAGCATCAAGGAAAGTCTAAGTCTGAAGCTA
AAAAAATGGCGATTGACTACATGGAAAGTGTTGGTATTCCAGAAGCGGCGAAACGTTTTAAAGAGTATCCATTCCAGTAT
TCAGGAGGAATGCGTCAGCGTATTGTTATTGCGATTGCTTTGGCCTGTCGCCCTGATATTCTTATTTGTGATGAACCTAC
AACAGCTTTGGATGTTACCATCCAAGCTCAAATCATTAAGTTGCTTAAAGATTTGCAAGCTGAATATAGTTTCACAACTA
TATTTATTACACACGACTTAGGGGTAGTAGCAAGTATTGCGGACAAAGTGGCTGTTATGTATGCGGGTGATATCGTCGAA
TACGGCACAGTTGAGGATATTTTCTATGATCCTCACCACCCTTATACTTGGAGCTTATTGTCTAGTTTGCCGCAACTAGC
AGATGAAACAGGTGTCTTATTCTCTATTCCAGGAGCTCCACCATCGTTGTATAAGCCAATTGTAGGAGATGCCTTTGCGC
CACGTTCTCGTTATGCCATGCAAATTGACTTTGAAGAAGAAGCGCCAAAATTTTATGTTAATGATAACCACTGGGCCAAG
ACCTGGCTGTTACACCCAGATGCACCAGACGTTGATAAACCAGAAATGATACAAGATTTACATTCGAAAATTTCACAAAA
ACTAGGAAAAGAAAGGGTTGAACAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

80.802

98.31

0.794
  amiE Streptococcus thermophilus LMG 18311

80.229

98.31

0.789
  amiE Streptococcus thermophilus LMD-9

80.229

98.31

0.789
  oppD Streptococcus mutans UA159

56.97

92.958

0.53

Multiple sequence alignment