Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   A2G56_RS04285 Genome accession   NZ_CP014835
Coordinates   993016..993606 (-) Length   196 a.a.
NCBI ID   WP_018381204.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 988016..998606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS04260 - 988331..989095 (-) 765 WP_062709513.1 ABC transporter ATP-binding protein -
  A2G56_RS04265 - 989095..990048 (-) 954 WP_062709516.1 branched-chain amino acid ABC transporter permease -
  A2G56_RS04270 - 990053..990922 (-) 870 WP_062709519.1 branched-chain amino acid ABC transporter permease -
  A2G56_RS04275 - 991059..992234 (-) 1176 WP_062709522.1 ABC transporter substrate-binding protein -
  A2G56_RS04280 - 992668..992922 (-) 255 WP_062709525.1 DUF2129 domain-containing protein -
  A2G56_RS04285 clpP 993016..993606 (-) 591 WP_018381204.1 ATP-dependent Clp protease proteolytic subunit Regulator
  A2G56_RS04290 upp 993799..994428 (-) 630 WP_062709528.1 uracil phosphoribosyltransferase -
  A2G56_RS04295 - 994521..995687 (-) 1167 WP_062709531.1 MalY/PatB family protein -
  A2G56_RS04300 - 995697..996791 (-) 1095 WP_062709534.1 cystathionine gamma-synthase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21563.76 Da        Isoelectric Point: 4.7327

>NTDB_id=174464 A2G56_RS04285 WP_018381204.1 993016..993606(-) (clpP) [Streptococcus halotolerans strain HTS9]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMMHQPMGGTGGGTQQTDMAIAAEHLLKTRHKLEKILSDNSGQ
SMEKIHIDAERDRWMDAEETLAYGFIDAIMDNNELK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=174464 A2G56_RS04285 WP_018381204.1 993016..993606(-) (clpP) [Streptococcus halotolerans strain HTS9]
ATGATTCCTGTAGTTATTGAACAAACGTCACGCGGTGAGCGTTCTTATGATATTTACTCACGTCTGCTAAAAGACCGTAT
TATTATGTTAACGGGTCCAGTTGAAGATAACATGGCAAACTCAGTGATTGCGCAGTTGCTTTTCTTGGATGCCCAAGACC
CAACTAAAGATATCTACCTTTATGTCAATACGCCCGGTGGTTCTGTTTCTGCTGGCTTGGCTATCGTTGATACCATGAAC
TTCATCAAAGCTGATGTGCAAACCATCGTTATGGGAATGGCAGCTTCAATGGGGACTATTATCGCATCATCAGGTGCCAA
GGGTAAACGTTTCATGTTGCCAAACGCAGAATACATGATGCACCAACCGATGGGAGGTACTGGTGGCGGTACGCAACAAA
CAGATATGGCTATCGCTGCTGAGCATCTTTTGAAAACACGTCACAAACTAGAAAAAATTCTTTCTGATAATTCAGGACAA
AGTATGGAAAAAATCCATATCGATGCTGAACGTGATCGCTGGATGGATGCTGAAGAAACACTTGCATATGGCTTCATCGA
TGCTATTATGGATAACAATGAATTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

91.795

99.49

0.913
  clpP Streptococcus pneumoniae D39

91.795

99.49

0.913
  clpP Streptococcus pneumoniae R6

91.795

99.49

0.913
  clpP Streptococcus pneumoniae TIGR4

91.795

99.49

0.913
  clpP Streptococcus pyogenes MGAS315

90.816

100

0.908
  clpP Streptococcus pyogenes JRS4

90.816

100

0.908
  clpP Streptococcus thermophilus LMG 18311

89.286

100

0.893
  clpP Streptococcus thermophilus LMD-9

89.286

100

0.893
  clpP Streptococcus mutans UA159

88.776

100

0.888
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

84.694

100

0.847
  clpP Lactococcus lactis subsp. cremoris KW2

84.184

100

0.842
  clpP Bacillus subtilis subsp. subtilis str. 168

57.653

100

0.577
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.477

98.469

0.556

Multiple sequence alignment