Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BLD39_RS04145 Genome accession   NZ_CP017871
Coordinates   788076..788624 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain BP3183     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 783076..793624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD39_RS04115 (BLD39_04115) ctsT 783118..783423 (-) 306 WP_002783353.1 hypothetical protein Machinery gene
  BLD39_RS04120 (BLD39_04120) proC 783420..784157 (-) 738 WP_052779178.1 pyrroline-5-carboxylate reductase Machinery gene
  BLD39_RS04125 (BLD39_04125) fliW 784157..784546 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  BLD39_RS04130 (BLD39_04130) - 784710..785357 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  BLD39_RS04135 (BLD39_04135) lon 785373..787748 (+) 2376 WP_057031133.1 endopeptidase La -
  BLD39_RS04140 (BLD39_04140) rpsR 787805..788065 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  BLD39_RS04145 (BLD39_04145) ssb 788076..788624 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  BLD39_RS04150 (BLD39_04150) rpsF 788633..789010 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  BLD39_RS04155 (BLD39_04155) - 789289..790561 (+) 1273 Protein_811 MFS transporter -
  BLD39_RS04160 (BLD39_04160) - 790561..791562 (+) 1002 WP_002791744.1 sugar phosphate isomerase/epimerase -
  BLD39_RS09435 (BLD39_04165) - 791555..792412 (-) 858 Protein_813 VirK family antimicrobial peptide resistance protein -
  BLD39_RS04170 (BLD39_04170) rseP 792409..793512 (-) 1104 WP_002799256.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=171897 BLD39_RS04145 WP_002777084.1 788076..788624(-) (ssb) [Campylobacter coli strain BP3183]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=171897 BLD39_RS04145 WP_002777084.1 788076..788624(-) (ssb) [Campylobacter coli strain BP3183]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAATATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTATGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379

Multiple sequence alignment