Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   AXE83_RS09075 Genome accession   NZ_CP014264
Coordinates   1948010..1949989 (-) Length   659 a.a.
NCBI ID   WP_060956210.1    Uniprot ID   A0A0X8JZF8
Organism   Streptococcus sp. oral taxon 431 strain F0610 (5-114)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1943010..1954989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXE83_RS09055 (AXE83_09055) amiF 1943509..1944435 (-) 927 WP_060956207.1 ATP-binding cassette domain-containing protein Regulator
  AXE83_RS09060 (AXE83_09060) amiE 1944446..1945513 (-) 1068 WP_060956208.1 ABC transporter ATP-binding protein Regulator
  AXE83_RS09065 (AXE83_09065) amiD 1945522..1946448 (-) 927 WP_060956209.1 oligopeptide ABC transporter permease OppC Regulator
  AXE83_RS09070 (AXE83_09070) amiC 1946448..1947944 (-) 1497 WP_049528232.1 ABC transporter permease Regulator
  AXE83_RS09075 (AXE83_09075) amiA 1948010..1949989 (-) 1980 WP_060956210.1 peptide ABC transporter substrate-binding protein Regulator
  AXE83_RS09085 (AXE83_09085) - 1950313..1951569 (-) 1257 WP_037612702.1 ISL3 family transposase -
  AXE83_RS09090 (AXE83_09090) - 1951748..1953079 (-) 1332 WP_060956211.1 hemolysin family protein -
  AXE83_RS09095 (AXE83_09095) endA 1953332..1954162 (-) 831 WP_060956212.1 DNA/RNA non-specific endonuclease Machinery gene
  AXE83_RS09100 (AXE83_09100) - 1954528..1954716 (-) 189 WP_060956404.1 DNA-directed RNA polymerase subunit beta -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72770.81 Da        Isoelectric Point: 4.7737

>NTDB_id=170023 AXE83_RS09075 WP_060956210.1 1948010..1949989(-) (amiA) [Streptococcus sp. oral taxon 431 strain F0610 (5-114)]
MKKSRIFAVAGVALLATGVLAACGSSKSSNAEAPKAYGYVYTADPETLDYLISGKQSTKVVTSNGIDGLFTNDKYGNLTP
AVAEDWSVSQDGLTYTYKIRKGVKWLTADGEEYAEVTANDFVTGLKHAADKKSEALYLAQDSVKGLADYVAGNSTDFSTV
GVKAVDDYTLQYTLNKPEPYWNSKMSYAIFWPLNAEFEKSKGSDFGKSTDPTSLLYNGPFLLKGLTAKSSVEFVKNEQYW
DKDNVHLDTVTLAFYDGSDQESIERNFTSGAYSYARLFPTSSNYSKIAETYKDNIYYTPQGAGIAGLGVNIDRQSYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTSYSAQLNGEDGAALAVRNLFVKPDFVSAGEKTFGDLVTEKVVSYGDEWKD
VNFADGQDGLYNADKAKAEFAKAKKALEADGVKFPIHLDIPVDQTAKSYIARIQSFKQSVEKVLGEENVVIDIQQVTKDE
LFNITYYAPNAAAEDWDLSGAVGWNPDYQDPSTYLDILQTSNSEQTKTYMGYDNPSNPAVTQVGLKDYDKLLEEAGNETS
DLNKRYEKYAAAQAWLTDSSLFLPAMSSSGAAPVISRVVPFSASYTQSGDKGSDVYFKYLKLQANTVTTKEYKEAREKWL
KEKAESNEKAQKELASHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=170023 AXE83_RS09075 WP_060956210.1 1948010..1949989(-) (amiA) [Streptococcus sp. oral taxon 431 strain F0610 (5-114)]
ATGAAAAAAAGTCGGATTTTTGCAGTAGCAGGCGTAGCCCTACTTGCAACAGGTGTTCTCGCGGCTTGCGGTTCTTCAAA
ATCATCTAATGCTGAGGCTCCAAAAGCCTACGGATATGTATATACAGCTGATCCAGAAACTTTGGACTACCTTATCTCTG
GTAAGCAAAGTACAAAAGTTGTCACTTCAAATGGTATCGATGGACTCTTTACAAATGATAAATATGGTAACCTCACTCCT
GCAGTTGCAGAAGATTGGTCAGTGTCTCAAGATGGTTTGACATACACTTATAAGATTCGTAAAGGTGTAAAATGGCTCAC
AGCTGATGGTGAAGAATATGCAGAAGTAACTGCTAATGACTTTGTTACAGGTTTGAAACACGCAGCTGATAAGAAATCAG
AAGCATTGTATCTTGCTCAAGATTCTGTAAAAGGTTTGGCAGATTATGTGGCTGGGAACTCAACTGACTTTTCAACTGTT
GGTGTAAAAGCTGTTGATGACTACACTCTTCAATACACTTTGAACAAACCAGAGCCATATTGGAATTCTAAAATGTCTTA
CGCAATCTTCTGGCCTTTGAATGCAGAGTTTGAAAAATCAAAAGGTTCAGACTTTGGTAAGTCAACAGATCCAACATCAT
TGCTTTACAATGGTCCTTTCTTGCTTAAAGGATTAACTGCTAAGTCTTCTGTTGAGTTTGTGAAGAATGAGCAATATTGG
GATAAAGATAATGTTCACTTAGACACTGTGACGCTTGCATTCTATGATGGTTCAGACCAAGAATCAATCGAACGTAACTT
TACAAGTGGTGCATACAGCTACGCCCGTCTCTTCCCAACAAGTTCAAATTATTCTAAAATCGCAGAAACATACAAAGACA
ACATTTACTATACTCCACAAGGAGCTGGTATTGCTGGTTTGGGTGTTAATATTGACCGTCAAAGCTATAAATATACATCA
AAAACAACTGATGAAGAAAAGACTTCTACTAAGAAAGCCCTTCTTAACAAAGACTTCCGTCAAGCTTTGAACTTTGCATT
TGACCGTACATCATACTCTGCTCAGCTGAATGGTGAAGATGGAGCAGCGCTTGCTGTTCGTAACCTATTTGTAAAACCAG
ACTTTGTTTCTGCAGGTGAGAAAACATTTGGTGACTTGGTTACTGAGAAAGTTGTTTCTTATGGTGATGAGTGGAAAGAT
GTAAACTTTGCAGATGGTCAAGATGGTCTTTATAATGCTGATAAAGCGAAAGCAGAATTTGCTAAAGCTAAGAAGGCTTT
GGAAGCAGATGGCGTGAAATTCCCAATTCACTTGGATATTCCAGTTGACCAAACTGCTAAGAGCTACATTGCGCGTATTC
AGTCCTTCAAACAATCTGTTGAAAAAGTTCTTGGTGAAGAAAATGTAGTCATCGATATCCAACAAGTAACAAAAGATGAA
TTATTTAACATCACTTACTATGCTCCGAATGCAGCAGCTGAGGATTGGGATCTTTCAGGTGCCGTTGGATGGAACCCAGA
CTATCAAGACCCATCAACTTACCTTGATATCTTGCAAACAAGTAACAGCGAGCAAACAAAGACTTACATGGGTTATGACA
ATCCATCAAATCCAGCAGTTACCCAAGTTGGTTTGAAAGACTACGACAAGTTGCTTGAAGAAGCTGGTAATGAAACAAGT
GACCTTAACAAACGTTATGAGAAATATGCAGCAGCTCAAGCTTGGTTGACAGATAGCTCCCTCTTCCTTCCAGCTATGTC
ATCTTCAGGAGCAGCGCCAGTTATTTCTCGTGTAGTACCATTCTCGGCCTCTTACACTCAATCTGGTGATAAAGGTTCAG
ATGTATACTTCAAGTACCTTAAATTGCAAGCTAACACTGTAACAACCAAAGAGTACAAAGAAGCTCGTGAAAAATGGCTC
AAAGAAAAAGCTGAATCAAACGAAAAAGCTCAAAAAGAGTTAGCGAGTCATGTGAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

67.527

100

0.675
  amiA3 Streptococcus thermophilus LMG 18311

67.121

100

0.672
  amiA3 Streptococcus thermophilus LMD-9

67.121

100

0.672

Multiple sequence alignment