Detailed information NTG0168022

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AL549_RS19095
• Genome accession: NZ_CP014049
• Coordinates: 2291219..2292211 (-)
• Length: 330 a.a.
• NCBI ID: WP_045596855.1
• Uniprot ID: A0AAN1PM43
• Organism: Vibrio vulnificus strain FDAARGOS_119
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2286219..2297211

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL549_RS19075 (AL549_17560)	recX	2286246..2286707 (-)	462	WP_061058917.1	recombination regulator RecX	-
AL549_RS19080 (AL549_17565)	recA	2286811..2287860 (-)	1050	WP_011079524.1	recombinase RecA	Machinery gene
AL549_RS19085 (AL549_17570)	pncC	2287995..2288498 (-)	504	WP_060530760.1	nicotinamide-nucleotide amidase	-
AL549_RS19090 (AL549_17575)	mutS	2288582..2291143 (+)	2562	WP_061058918.1	DNA mismatch repair protein MutS	-
AL549_RS19095 (AL549_17580)	rpoS	2291219..2292211 (-)	993	WP_045596855.1	RNA polymerase sigma factor RpoS	Regulator
AL549_RS19100 (AL549_17585)	-	2292292..2293188 (-)	897	WP_039554645.1	peptidoglycan DD-metalloendopeptidase family protein	-
AL549_RS19105 (AL549_17590)	-	2293232..2293858 (-)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AL549_RS19110 (AL549_17595)	surE	2293861..2294628 (-)	768	WP_011079518.1	5'/3'-nucleotidase SurE	-
AL549_RS19115 (AL549_17600)	truD	2294634..2295677 (-)	1044	WP_011079517.1	tRNA pseudouridine(13) synthase TruD	-
AL549_RS19120 (AL549_17605)	ispF	2295713..2296189 (-)	477	WP_061058919.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AL549_RS19125 (AL549_17610)	ispD	2296186..2296899 (-)	714	WP_045618620.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AL549_RS19130 (AL549_17615)	ftsB	2296899..2297180 (-)	282	WP_011079514.1	cell division protein FtsB	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38041.08 Da
• Isoelectric Point: 4.4791

>NTDB_id=168022 AL549_RS19095 WP_045596855.1 2291219..2292211(-) (rpoS) [Vibrio vulnificus strain FDAARGOS_119]
MSISNTVTKVKDFDVNQMDDDFNDDIEINEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLEIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=168022 AL549_RS19095 WP_045596855.1 2291219..2292211(-) (rpoS) [Vibrio vulnificus strain FDAARGOS_119]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATTTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATTAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACACAGCTCTATCTAGGAGAGATTGGTTTTTCTCCACTATTAACCGCAGAAGAAGAAGTTCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCACGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGTGCGGTAGAGAAATTCGATCCAG
AGCGTGGTTTCCGCTTCTCGACTTACGCAACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAGCTTTCTCAAAAACTCGA
TCATGAACCAACCGCTGAAGAGATCGCTGCACAACTGGAGATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGTATTAGTTCTGTCGATACACCGATTGGTGGAGATGGAGAGAAGGCGTTATTGGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGTTATGAGCCTTCAACGCTGGAAGAGGTTGGGCAAGAGATTGGTT
TAACTCGCGAGCGAGTACGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAATTTGTTTGATATAGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70 region 2 (Sigma70_r2) (91-160)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.602	100	0.833