Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AL543_RS22485 Genome accession   NZ_CP014043
Coordinates   508778..509638 (+) Length   286 a.a.
NCBI ID   WP_061053029.1    Uniprot ID   -
Organism   Vibrio mimicus strain FDAARGOS_112     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 503778..514638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL543_RS09165 (AL543_08420) greB 504229..504711 (-) 483 WP_000850497.1 transcription elongation factor GreB -
  AL543_RS09170 (AL543_08425) - 504954..507275 (+) 2322 WP_061051725.1 Tex family protein -
  AL543_RS09175 (AL543_08430) - 507367..507837 (-) 471 WP_061051726.1 hypothetical protein -
  AL543_RS09180 (AL543_08435) bioH 508081..508842 (-) 762 WP_061051727.1 pimeloyl-ACP methyl ester esterase BioH -
  AL543_RS22485 (AL543_08440) comF 508778..509638 (+) 861 WP_061053029.1 ComF family protein Machinery gene
  AL543_RS09190 (AL543_08445) nfuA 509727..510314 (+) 588 WP_061051728.1 Fe-S biogenesis protein NfuA -
  AL543_RS09195 (AL543_08450) nudE 510453..511001 (+) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  AL543_RS09200 (AL543_08455) cysQ 511024..511851 (+) 828 WP_000106707.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AL543_RS09205 (AL543_08460) - 511892..512650 (-) 759 WP_061051729.1 type II secretion system protein N -
  AL543_RS09210 (AL543_08465) - 512652..513149 (-) 498 WP_061051730.1 type II secretion system protein M -
  AL543_RS09215 (AL543_08470) gspL 513159..514370 (-) 1212 WP_061051731.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32710.71 Da        Isoelectric Point: 8.5454

>NTDB_id=167906 AL543_RS22485 WP_061053029.1 508778..509638(+) (comF) [Vibrio mimicus strain FDAARGOS_112]
MPQPCTNTRSCPCPLTCQYNAMVTFSPSISIFIHSANWQDEANYPDSWLAMLTNWLRKTTAPLLIPECHLCRLALDKETP
FGVCTACQAWLEHGYRCARCGLPTLTAVEQCGQCLRQPPPWRKLICVGDYRFPLSDAAHQLKYQRQFWQAPRLAKLLATR
ISEPAPLLCSVPLHWRRRWQRGFNQSDLLARELARSLHTQYDSQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHQPNQQ
HIAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSKG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=167906 AL543_RS22485 WP_061053029.1 508778..509638(+) (comF) [Vibrio mimicus strain FDAARGOS_112]
ATGCCCCAGCCGTGCACCAATACTAGATCTTGTCCTTGCCCACTGACTTGCCAATACAACGCCATGGTCACATTTTCTCC
CTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCAAATTACCCTGATTCTTGGCTCGCTATGTTAACCA
ATTGGCTCAGAAAAACCACCGCACCACTGCTCATTCCTGAGTGCCATCTTTGTCGACTGGCTCTCGATAAAGAAACCCCG
TTTGGAGTCTGCACCGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGTGCTCGCTGCGGTTTACCCACGCTCACGGC
TGTCGAGCAGTGCGGGCAGTGTCTGCGTCAGCCTCCGCCGTGGCGAAAACTGATTTGTGTCGGCGATTACCGCTTTCCAC
TCAGTGATGCGGCGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCACCACGTTTAGCTAAGTTACTCGCCACCCGG
ATTAGCGAGCCAGCCCCATTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGCTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGCGAATTAGCACGCTCATTACATACACAGTATGACAGCCAACTCTTTGCGCGCCGACGAGCCACACCAC
ACCAACAAGGACTCAGCAAAGCGCAGCGAATACACAACCTGCGTGATGCATTTGTTCTAAATCATCAGCCAAACCAGCAA
CATATTGCGATTGTGGATGATGTTGTGACCACAGGCAGTACCATCCGACATTTATGCGATTTACTGCTTGATGTCGGCGT
ACAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCAAAGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(190-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

91.259

100

0.913
  comF Vibrio campbellii strain DS40M4

46.218

83.217

0.385

Multiple sequence alignment