Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   AL543_RS20545 Genome accession   NZ_CP014043
Coordinates   2933773..2937120 (-) Length   1115 a.a.
NCBI ID   WP_061052949.1    Uniprot ID   -
Organism   Vibrio mimicus strain FDAARGOS_112     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2928773..2942120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL543_RS20525 (AL543_19690) - 2929990..2930427 (+) 438 WP_000931473.1 HIT family protein -
  AL543_RS20530 (AL543_19695) - 2930509..2930739 (-) 231 WP_005522642.1 FeoC-like transcriptional regulator -
  AL543_RS20535 (AL543_19700) feoB 2930736..2933012 (-) 2277 WP_061052948.1 Fe(2+) transporter permease subunit FeoB -
  AL543_RS20540 (AL543_19705) - 2933009..2933239 (-) 231 WP_005510237.1 FeoA family protein -
  AL543_RS20545 (AL543_19710) tfoS 2933773..2937120 (-) 3348 WP_061052949.1 AraC family transcriptional regulator Regulator
  AL543_RS20550 (AL543_19715) znuA 2937321..2938205 (-) 885 WP_061052950.1 zinc ABC transporter substrate-binding protein ZnuA -
  AL543_RS20555 (AL543_19720) znuC 2938288..2939076 (+) 789 WP_000996138.1 zinc ABC transporter ATP-binding protein ZnuC -
  AL543_RS20560 (AL543_19725) znuB 2939069..2939851 (+) 783 WP_005519624.1 zinc ABC transporter permease subunit ZnuB -
  AL543_RS20565 (AL543_19730) sucD 2939939..2940811 (-) 873 WP_061052951.1 succinate--CoA ligase subunit alpha -
  AL543_RS20570 (AL543_19735) sucC 2940811..2941977 (-) 1167 WP_061052952.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1115 a.a.        Molecular weight: 126804.20 Da        Isoelectric Point: 7.2671

>NTDB_id=167905 AL543_RS20545 WP_061052949.1 2933773..2937120(-) (tfoS) [Vibrio mimicus strain FDAARGOS_112]
MLRTFLYGCLLNLIIPSLALALDKSMSVFYPLPIQEQGRVIVAQNLYLGNDGGIWVHDVHGKVMYFDGQNILPRRGSVLP
QTSSHIVYANSAFWTFEQHELFRTYPGKPKELMISLTPGTQINQMGASNGMIWMTDSENFYSYEIRSGRINSLSLHELYQ
LNSASAVVINDAQYMVSKWALATNVGVYLSEEHGFAHVKKSGKSYIQKLYFSHKRRELLVGSKHGAIVVDIENKRTLPEK
IGSSHVLSIAETEKEYWVGTEDGLYVYSIITGKVVQLESNNSGDYTLLGRKIYAMVNDFQGGMWIATDKGIFYYSLFGQQ
FTRYAAQTLSNDGNEAKLSKPKALNSAGDYLAITQQGLYNFNFSDELRKHLIYPGEINDFVISGDNVWIATKKGLIRYNL
NRRSVDTPQLPLPLLQTEVDHLTMDRNGNLWGSSSHQVWSFSPKDQTYTDYGSEWMVKKFSPSRITLLAAVEKGIVIGTE
HGAYSLFGKQIRFDFASHRYGEIIQAVEDADGHIWVVGSYGVFRWRKDQYEATPVELIEENIQPLCIAESKQGIWLVSSK
GISYYHLQGQLNKHFGAPYGLVSNEFLSSSCAVGDEQGTSSLIMGSQLGVVKANTEELAVSNVPNIQVMFSQVSVNHSTK
LLGYRMPEPLKIAYGDAISFQFGALPSSRNQSLEYKLNDDPHWQRFDWALLNFDQLLPGKYRLRVRSANPTQRYRTEALF
DFEVLQPWYMTPVAIVGYVLTLFSVLALAFWWRTRMMVKVNRKLKAQVDLKTSQLRHQSKIVLSNNHQLRKQLQLHHNIL
GKVLEGVDPLLRHLSSYAKVRGWYEFDVPFSKVKQELAQLHFMHRGDVEESKYHDLHLLIESALKSWQEEYSKAAIQLTY
SGETRFIEVRQFNLDVLFNAVLTDAIKRLYKNQELNIRLELRDEHAVVVFSDYGAPIENIESVQVNLTGYGAYPLQELVT
RSGGELRVFALQERNIVELSWPLATLAELEPFKSDESESDVKPSIDAVDKEWLSKIEKLIEQNYSDPNFTTSSAAKSLFV
SERSLQRRFKAVTGKTFKESLNEVRLEKACQSLLAGTKIAQAAFDCGFNDPSYFSQRFKHHFGLSPSQFIEDREA

Nucleotide


Download         Length: 3348 bp        

>NTDB_id=167905 AL543_RS20545 WP_061052949.1 2933773..2937120(-) (tfoS) [Vibrio mimicus strain FDAARGOS_112]
GTGTTGCGCACATTTTTATACGGCTGCTTGCTGAACCTCATTATTCCTTCACTGGCATTGGCGCTGGATAAGTCAATGTC
GGTATTTTATCCCTTGCCTATTCAAGAGCAGGGGAGAGTCATTGTCGCTCAAAATCTCTATCTTGGTAACGATGGAGGAA
TTTGGGTTCATGATGTCCATGGCAAGGTCATGTATTTTGATGGACAAAATATCCTGCCGCGACGTGGCTCGGTTCTACCT
CAAACCTCTAGCCATATTGTTTATGCGAATAGTGCTTTCTGGACTTTCGAGCAGCATGAACTGTTTAGGACCTATCCCGG
TAAACCCAAAGAGCTGATGATAAGCCTCACACCCGGTACCCAAATCAACCAGATGGGGGCATCTAATGGCATGATTTGGA
TGACGGATAGTGAAAATTTTTATAGTTATGAGATTCGCAGTGGGCGAATTAACTCTCTATCACTACATGAGCTTTATCAG
CTAAATAGTGCGAGTGCCGTGGTGATTAATGATGCTCAATACATGGTTTCCAAATGGGCTTTGGCAACGAATGTTGGCGT
CTATTTATCTGAAGAGCACGGATTTGCACACGTTAAAAAATCAGGAAAGAGCTATATTCAAAAGCTGTATTTTTCACACA
AACGCCGAGAGTTGTTAGTAGGTTCAAAGCATGGCGCTATTGTTGTCGATATTGAAAATAAGCGTACGTTACCCGAAAAA
ATTGGCTCCTCACATGTCTTATCCATTGCGGAAACAGAAAAAGAGTATTGGGTTGGTACGGAAGACGGACTGTATGTTTA
CTCAATTATCACGGGTAAGGTGGTTCAGTTAGAGAGTAATAACAGTGGTGATTACACCTTATTGGGTAGAAAAATCTACG
CCATGGTGAACGATTTTCAAGGTGGCATGTGGATAGCAACAGATAAAGGGATCTTTTATTACTCATTATTTGGGCAACAA
TTCACTCGTTATGCCGCTCAAACTCTCTCAAATGATGGTAATGAAGCGAAGCTCAGTAAACCTAAGGCTTTGAATTCGGC
TGGTGATTATTTAGCCATAACACAGCAAGGGCTCTATAACTTCAATTTTTCCGATGAGTTGCGTAAACATCTGATTTATC
CTGGTGAGATTAATGACTTTGTCATATCGGGAGATAATGTTTGGATTGCGACAAAGAAAGGTTTGATTCGATATAACCTT
AATCGTCGTAGTGTTGATACTCCGCAGTTGCCTCTTCCATTACTGCAAACAGAAGTCGATCACTTAACCATGGATAGGAA
TGGAAACCTGTGGGGATCGAGCAGTCATCAGGTCTGGTCATTCTCACCTAAGGATCAAACCTATACGGATTATGGTTCAG
AGTGGATGGTTAAGAAGTTTTCGCCTTCGCGAATCACTCTACTTGCTGCTGTGGAAAAAGGCATTGTGATTGGCACAGAA
CATGGTGCTTATTCTTTGTTCGGCAAACAGATTCGCTTTGATTTTGCTAGTCACCGTTATGGTGAAATTATCCAAGCGGT
AGAAGATGCGGATGGGCACATCTGGGTGGTTGGATCGTATGGCGTTTTTCGTTGGCGTAAAGATCAATACGAGGCGACTC
CAGTAGAACTCATCGAGGAGAATATTCAACCTTTGTGCATTGCTGAATCAAAGCAAGGCATATGGCTTGTCTCTTCTAAA
GGCATCAGTTATTACCACCTTCAAGGCCAATTGAACAAACACTTTGGTGCTCCTTATGGCTTGGTCAGTAATGAATTTTT
ATCTTCATCTTGTGCGGTAGGCGATGAACAAGGTACTTCCTCACTTATCATGGGCTCACAACTTGGCGTTGTTAAAGCCA
ATACTGAAGAGCTAGCGGTATCGAATGTGCCAAATATTCAGGTGATGTTTAGCCAGGTGAGCGTTAACCATAGCACTAAG
CTGTTGGGTTATCGTATGCCGGAACCGTTGAAAATAGCCTATGGCGATGCGATTAGCTTTCAGTTTGGAGCCTTGCCCTC
TTCGCGAAATCAGTCTTTAGAATACAAGCTTAATGATGATCCACACTGGCAGCGTTTTGATTGGGCGTTACTGAATTTTG
ACCAACTCTTACCCGGAAAATATCGTCTGAGAGTACGCAGTGCAAACCCAACTCAGCGATACCGAACCGAAGCATTATTT
GATTTTGAAGTTCTGCAGCCTTGGTATATGACTCCGGTGGCCATCGTTGGTTATGTTTTAACTCTTTTTAGCGTGTTGGC
TTTGGCTTTTTGGTGGCGGACGAGAATGATGGTTAAGGTTAACCGGAAATTGAAAGCGCAGGTTGATCTCAAAACCAGCC
AGCTACGCCATCAAAGCAAGATCGTGTTGAGTAATAACCATCAACTCCGTAAACAACTCCAACTTCACCACAATATACTG
GGTAAAGTTTTGGAAGGAGTTGACCCTTTACTACGTCACTTATCCTCTTATGCAAAAGTTCGTGGATGGTATGAGTTTGA
TGTTCCTTTTAGTAAAGTGAAACAGGAGCTCGCTCAACTTCATTTTATGCACCGAGGTGATGTTGAAGAGAGTAAATATC
ACGATTTACATCTATTGATCGAATCAGCATTAAAGAGTTGGCAAGAAGAATACAGCAAAGCCGCAATTCAACTGACTTAT
AGTGGTGAGACTCGGTTTATTGAAGTCCGTCAATTTAATCTTGACGTCTTGTTCAATGCCGTATTAACCGATGCCATAAA
GCGGTTGTATAAAAATCAAGAGTTGAATATACGCCTTGAACTTCGGGACGAGCACGCTGTTGTCGTATTTTCTGATTATG
GAGCACCGATAGAAAACATCGAATCGGTCCAAGTGAACTTGACTGGCTATGGAGCCTATCCGCTGCAAGAGTTAGTAACT
CGAAGTGGAGGAGAGTTGAGAGTCTTTGCACTGCAAGAGCGTAATATTGTCGAGCTTTCCTGGCCGTTAGCGACTCTTGC
TGAACTTGAGCCATTTAAGTCTGATGAAAGCGAATCAGATGTAAAACCGAGCATTGATGCCGTAGATAAAGAGTGGTTAA
GTAAGATCGAGAAATTGATTGAACAGAACTACAGTGATCCTAATTTCACCACTTCAAGTGCCGCAAAATCCTTGTTTGTG
TCGGAGCGAAGTTTGCAACGCCGCTTTAAAGCGGTAACCGGTAAAACCTTTAAAGAATCTCTTAATGAAGTCAGATTAGA
AAAGGCATGTCAGAGTTTATTGGCTGGTACCAAAATTGCCCAAGCTGCTTTTGACTGCGGATTTAATGACCCATCCTATT
TTAGCCAACGCTTCAAACACCATTTCGGATTATCACCAAGTCAATTCATCGAAGATCGAGAAGCCTAG

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1035-1110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

80.628

100

0.806

Multiple sequence alignment