Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AUL54_RS21855 Genome accession   NZ_CP013950
Coordinates   2755884..2756306 (+) Length   140 a.a.
NCBI ID   WP_269465406.1    Uniprot ID   -
Organism   Bacillus sp. SDLI1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2750884..2761306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUL54_RS13260 (AUL54_13270) degS 2750901..2752064 (+) 1164 WP_047475788.1 two-component sensor histidine kinase DegS Regulator
  AUL54_RS13265 (AUL54_13275) degU 2752141..2752830 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AUL54_RS13270 (AUL54_13280) - 2752928..2753776 (+) 849 WP_060964144.1 DegV family protein -
  AUL54_RS13275 (AUL54_13285) comFA 2753884..2755269 (+) 1386 WP_060964145.1 DEAD/DEAH box helicase Machinery gene
  AUL54_RS13280 (AUL54_13290) - 2755327..2755611 (+) 285 WP_016937770.1 competence protein ComFB -
  AUL54_RS21855 comFC 2755884..2756306 (+) 423 WP_269465406.1 phosphoribosyltransferase family protein Machinery gene
  AUL54_RS13290 (AUL54_13300) - 2756380..2756799 (+) 420 WP_047475784.1 TIGR03826 family flagellar region protein -
  AUL54_RS13295 (AUL54_13305) flgM 2756869..2757135 (+) 267 WP_016937773.1 flagellar biosynthesis anti-sigma factor FlgM -
  AUL54_RS13300 (AUL54_13310) - 2757150..2757632 (+) 483 WP_060964147.1 flagellar protein FlgN -
  AUL54_RS13305 (AUL54_13315) flgK 2757648..2759165 (+) 1518 WP_060964148.1 flagellar hook-associated protein FlgK -
  AUL54_RS13310 (AUL54_13320) flgL 2759178..2760095 (+) 918 WP_060964149.1 flagellar hook-associated protein FlgL -
  AUL54_RS13315 (AUL54_13325) - 2760186..2760755 (+) 570 WP_060964150.1 DUF6470 family protein -
  AUL54_RS13320 (AUL54_13330) fliW 2760785..2761216 (+) 432 WP_016937778.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15337.61 Da        Isoelectric Point: 9.9678

>NTDB_id=166515 AUL54_RS21855 WP_269465406.1 2755884..2756306(+) (comFC) [Bacillus sp. SDLI1]
MTRFKFRGDAKIIQAFERDFAAGYKAAYPSNTHTLVPIPLSGERLAERGFNQSELLASLLGMPVIYPLIRLNNEKQSKKS
KTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEALLTAGKALSVSSFTLIRS

Nucleotide


Download         Length: 423 bp        

>NTDB_id=166515 AUL54_RS21855 WP_269465406.1 2755884..2756306(+) (comFC) [Bacillus sp. SDLI1]
TTGACCCGGTTTAAATTTCGGGGTGATGCGAAAATCATTCAAGCATTTGAACGTGATTTTGCTGCCGGCTATAAAGCGGC
GTACCCGTCAAATACACATACCCTCGTCCCTATTCCGCTGAGCGGCGAACGGCTGGCGGAACGCGGATTCAATCAATCCG
AGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTACCCCCTCATCCGACTGAACAATGAAAAACAATCCAAAAAAAGC
AAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCAGCTGCTGAAAACTCCGCCGAAGGTATGAACGTCATTTTAATAGA
CGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGAAGCTCTGCTGACAGCAGGCAAAGCGTTATCGGTCTCCT
CTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(54-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

66.429

100

0.664
  comFC/cflB Streptococcus mitis NCTC 12261

36.691

99.286

0.364
  comFC/cflB Streptococcus pneumoniae TIGR4

35.915

100

0.364
  comFC/cflB Streptococcus pneumoniae Rx1

35.915

100

0.364
  comFC/cflB Streptococcus pneumoniae D39

35.915

100

0.364
  comFC/cflB Streptococcus pneumoniae R6

35.915

100

0.364

Multiple sequence alignment