Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AUL54_RS13275 Genome accession   NZ_CP013950
Coordinates   2753884..2755269 (+) Length   461 a.a.
NCBI ID   WP_060964145.1    Uniprot ID   -
Organism   Bacillus sp. SDLI1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2748884..2760269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUL54_RS13255 (AUL54_13265) - 2750031..2750678 (-) 648 WP_007614107.1 YigZ family protein -
  AUL54_RS13260 (AUL54_13270) degS 2750901..2752064 (+) 1164 WP_047475788.1 two-component sensor histidine kinase DegS Regulator
  AUL54_RS13265 (AUL54_13275) degU 2752141..2752830 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AUL54_RS13270 (AUL54_13280) - 2752928..2753776 (+) 849 WP_060964144.1 DegV family protein -
  AUL54_RS13275 (AUL54_13285) comFA 2753884..2755269 (+) 1386 WP_060964145.1 DEAD/DEAH box helicase Machinery gene
  AUL54_RS13280 (AUL54_13290) - 2755327..2755611 (+) 285 WP_016937770.1 competence protein ComFB -
  AUL54_RS21855 comFC 2755884..2756306 (+) 423 WP_269465406.1 phosphoribosyltransferase family protein Machinery gene
  AUL54_RS13290 (AUL54_13300) - 2756380..2756799 (+) 420 WP_047475784.1 TIGR03826 family flagellar region protein -
  AUL54_RS13295 (AUL54_13305) flgM 2756869..2757135 (+) 267 WP_016937773.1 flagellar biosynthesis anti-sigma factor FlgM -
  AUL54_RS13300 (AUL54_13310) - 2757150..2757632 (+) 483 WP_060964147.1 flagellar protein FlgN -
  AUL54_RS13305 (AUL54_13315) flgK 2757648..2759165 (+) 1518 WP_060964148.1 flagellar hook-associated protein FlgK -
  AUL54_RS13310 (AUL54_13320) flgL 2759178..2760095 (+) 918 WP_060964149.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52385.60 Da        Isoelectric Point: 10.0159

>NTDB_id=166485 AUL54_RS13275 WP_060964145.1 2753884..2755269(+) (comFA) [Bacillus sp. SDLI1]
MSEDASEFSEVRDFFYGRHLLRSEIPFSDQRINSFIEKEHITAEPSVIRRKNRYACRRCGQSDQACFAAFWAPSAKRHIT
YCRACVVMGRADELTSLYSWNQTSESSWEPVKLAWEGTLTDGQKQAAGALIKAIKEKQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFENVEVSALYGSSEDKGSLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKNNSALVYVTATPSDALKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLEKGKLPHSVTDWV
RQKLQSRLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVSKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=166485 AUL54_RS13275 WP_060964145.1 2753884..2755269(+) (comFA) [Bacillus sp. SDLI1]
ATGTCCGAAGATGCTTCAGAATTTTCAGAGGTGAGGGATTTCTTTTACGGCAGGCATTTGTTGAGATCTGAGATACCGTT
TTCAGATCAGCGTATCAATTCTTTTATAGAAAAAGAACATATAACGGCCGAGCCGTCTGTTATCCGCAGGAAAAACCGTT
ACGCCTGCCGCCGATGCGGCCAGTCTGACCAAGCCTGCTTTGCCGCATTCTGGGCGCCTTCTGCCAAAAGACATATTACC
TATTGCCGTGCCTGTGTCGTAATGGGAAGGGCTGATGAACTGACGTCATTATATTCTTGGAATCAAACCTCAGAAAGCAG
CTGGGAGCCTGTAAAGCTTGCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCCGGCGCGCTTATAAAAGCGA
TAAAAGAGAAACAAGAACTGTTAGTGTGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATAGAGTTT
GCACTGAATCACGGATTGCGGGTCTGTGTCGCGACTCCGCGTACAGATGTCGTGCTTGAACTTCTGCCGAGACTGAAAAA
AGCATTTGAGAATGTTGAAGTTTCAGCTCTGTACGGCAGCAGTGAAGACAAAGGCAGTTTAACTCCGCTAATGATCTCAA
CCGCTCACCAGCTGATGCGATATCGGGACATTTTTGATGTCATGATAATAGATGAAGTGGATGCATTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCGGTTGATAAAGCCAGAAAGAACAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CGCATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGAAAACCTCTCCCGG
AGCCGCGTTTTTTATGGTGCGGCAATTGGAAGAAGAAGCTTGAGAAAGGAAAACTGCCGCACTCAGTAACGGATTGGGTC
CGGCAAAAACTTCAATCACGGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATATCCGCGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACAACTACGATTTTAGAAAGAGGAGTTACCGTATCCAAAGTTCAGACATGTGTCCTCGGC
GCGGAAGCACCTATCTTTACTGAGAGCGCGCTCGTGCAGATCGCAGGCAGAACGGGAAGGCACTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(329-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

61.957

99.783

0.618
  comFA Latilactobacillus sakei subsp. sakei 23K

37.955

95.445

0.362

Multiple sequence alignment