Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AUL54_RS13265 Genome accession   NZ_CP013950
Coordinates   2752141..2752830 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. SDLI1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2747141..2757830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUL54_RS13245 (AUL54_13255) - 2747613..2748689 (+) 1077 WP_060964142.1 MraY family glycosyltransferase -
  AUL54_RS13250 (AUL54_13260) - 2748788..2750026 (-) 1239 WP_060964143.1 LCP family protein -
  AUL54_RS13255 (AUL54_13265) - 2750031..2750678 (-) 648 WP_007614107.1 YigZ family protein -
  AUL54_RS13260 (AUL54_13270) degS 2750901..2752064 (+) 1164 WP_047475788.1 two-component sensor histidine kinase DegS Regulator
  AUL54_RS13265 (AUL54_13275) degU 2752141..2752830 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AUL54_RS13270 (AUL54_13280) - 2752928..2753776 (+) 849 WP_060964144.1 DegV family protein -
  AUL54_RS13275 (AUL54_13285) comFA 2753884..2755269 (+) 1386 WP_060964145.1 DEAD/DEAH box helicase Machinery gene
  AUL54_RS13280 (AUL54_13290) - 2755327..2755611 (+) 285 WP_016937770.1 competence protein ComFB -
  AUL54_RS21855 comFC 2755884..2756306 (+) 423 WP_269465406.1 phosphoribosyltransferase family protein Machinery gene
  AUL54_RS13290 (AUL54_13300) - 2756380..2756799 (+) 420 WP_047475784.1 TIGR03826 family flagellar region protein -
  AUL54_RS13295 (AUL54_13305) flgM 2756869..2757135 (+) 267 WP_016937773.1 flagellar biosynthesis anti-sigma factor FlgM -
  AUL54_RS13300 (AUL54_13310) - 2757150..2757632 (+) 483 WP_060964147.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=166484 AUL54_RS13265 WP_003219701.1 2752141..2752830(+) (degU) [Bacillus sp. SDLI1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=166484 AUL54_RS13265 WP_003219701.1 2752141..2752830(+) (degU) [Bacillus sp. SDLI1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAAGCGGCTCGTATCGTCGAGCATTATCATCCCGATGTCGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACCCATGCTTTAAAAACAGGCGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCGGATACTTTAATTGAGGCAGTGAAAGTAGTAGCCGAAGGCGGTTCGTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGACGTCTTGCGACAAGCGGAGTTTCCGCTCATCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAACGACCGGA
CACAAGCTGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment