Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AV904_RS05755 Genome accession   NZ_CP013911
Coordinates   1206772..1207092 (-) Length   106 a.a.
NCBI ID   WP_037558197.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain S167     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1201772..1212092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AV904_RS05720 (AV904_05735) gcvPA 1202323..1203675 (-) 1353 WP_037558205.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  AV904_RS05725 (AV904_05740) gcvT 1203692..1204783 (-) 1092 WP_011275675.1 glycine cleavage system aminomethyltransferase GcvT -
  AV904_RS05730 (AV904_05745) - 1204972..1205490 (-) 519 WP_037558203.1 shikimate kinase -
  AV904_RS13155 (AV904_05755) - 1205650..1206141 (-) 492 WP_370741056.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AV904_RS05745 (AV904_05760) - 1206059..1206358 (-) 300 WP_037558199.1 hypothetical protein -
  AV904_RS05750 (AV904_05765) comGD 1206339..1206707 (-) 369 WP_123955564.1 competence type IV pilus minor pilin ComGD -
  AV904_RS05755 (AV904_05770) comGC 1206772..1207092 (-) 321 WP_037558197.1 competence type IV pilus major pilin ComGC Machinery gene
  AV904_RS05760 (AV904_05775) comGB 1207106..1208170 (-) 1065 WP_037558195.1 competence type IV pilus assembly protein ComGB -
  AV904_RS05765 (AV904_05780) - 1208142..1208819 (-) 678 Protein_1154 ATPase, T2SS/T4P/T4SS family -
  AV904_RS05770 (AV904_05785) - 1209003..1209500 (+) 498 WP_062931962.1 hypothetical protein -
  AV904_RS05775 (AV904_05790) - 1209834..1210145 (-) 312 WP_053017508.1 phage head closure protein -
  AV904_RS05780 (AV904_05795) - 1210157..1211800 (-) 1644 WP_053017510.1 terminase large subunit -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11781.90 Da        Isoelectric Point: 9.7431

>NTDB_id=165999 AV904_RS05755 WP_037558197.1 1206772..1207092(-) (comGC) [Staphylococcus haemolyticus strain S167]
MKNHFKNLKKLKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHIQSTGCEAQVKMINSQIEAYTLKHNRTPSNINDLIND
GLIKEGQKQCRSGETITISNGEAIAN

Nucleotide


Download         Length: 321 bp        

>NTDB_id=165999 AV904_RS05755 WP_037558197.1 1206772..1207092(-) (comGC) [Staphylococcus haemolyticus strain S167]
ATGAAGAATCACTTTAAAAATTTAAAAAAGTTAAAAGCCTTTACTCTAATAGAAATGTTATTAGTATTACTAATTATCAG
CGTATTACTAATATTAATTATTCCAAACATTGCAAAACAAACAGCTCATATCCAGTCCACAGGTTGTGAAGCTCAAGTCA
AAATGATAAATAGTCAAATAGAAGCATATACATTAAAACATAATCGAACACCTTCTAATATAAATGATCTTATAAATGAT
GGCCTTATAAAAGAAGGACAAAAACAATGCAGATCGGGAGAAACAATTACAATATCTAATGGTGAGGCTATTGCGAACTA
G

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

84.314

96.226

0.811
  comGC Staphylococcus aureus MW2

84.314

96.226

0.811
  comYC Streptococcus gordonii str. Challis substr. CH1

42.991

100

0.434
  comGC/cglC Streptococcus mitis SK321

45.745

88.679

0.406
  comGC/cglC Streptococcus pneumoniae TIGR4

44.681

88.679

0.396
  comGC/cglC Streptococcus mitis NCTC 12261

49.383

76.415

0.377
  comGC/cglC Streptococcus pneumoniae R6

48.148

76.415

0.368
  comGC/cglC Streptococcus pneumoniae D39

48.148

76.415

0.368
  comGC/cglC Streptococcus pneumoniae Rx1

48.148

76.415

0.368

Multiple sequence alignment