Detailed information NTG0164489

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: AVM03_RS10725
• Genome accession: NZ_CP013727
• Coordinates: 2266140..2266736 (+)
• Length: 198 a.a.
• NCBI ID: WP_003151513.1
• Uniprot ID: I2CAH7
• Organism: Bacillus amyloliquefaciens strain MBE1283
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2261140..2271736

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVM03_RS10700 (AVM03_10690)	-	2261150..2261461 (+)	312	WP_003151521.1	hypothetical protein	-
AVM03_RS10710 (AVM03_10700)	-	2261812..2263281 (-)	1470	WP_058906378.1	glycoside hydrolase family 32 protein	-
AVM03_RS10715 (AVM03_10705)	-	2263296..2264528 (-)	1233	WP_024085837.1	MFS transporter	-
AVM03_RS10720 (AVM03_10710)	-	2264918..2265892 (+)	975	WP_015387662.1	LacI family DNA-binding transcriptional regulator	-
AVM03_RS10725 (AVM03_10715)	clpP	2266140..2266736 (+)	597	WP_003151513.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
AVM03_RS10730 (AVM03_10720)	-	2266780..2267640 (-)	861	WP_015387661.1	LysR family transcriptional regulator	-
AVM03_RS10735 (AVM03_10725)	-	2267814..2268944 (+)	1131	WP_014305893.1	2-methylaconitate cis-trans isomerase PrpF family protein	-
AVM03_RS10740 (AVM03_10730)	-	2268987..2270363 (+)	1377	WP_032858264.1	MFS transporter	-
AVM03_RS10745 (AVM03_10735)	-	2270572..2271147 (-)	576	WP_058906379.1	TIGR00730 family Rossman fold protein	-
AVM03_RS10750 (AVM03_10740)	-	2271263..2271583 (+)	321	WP_003151506.1	MazG nucleotide pyrophosphohydrolase domain-containing protein	-

Sequence

Protein

• Length: 198 a.a.
• Molecular weight: 21831.06 Da
• Isoelectric Point: 4.6982

>NTDB_id=164489 AVM03_RS10725 WP_003151513.1 2266140..2266736(+) (clpP) [Bacillus amyloliquefaciens strain MBE1283]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSADEALEYGLIDKVLTRNTEDQK

Nucleotide

• Length: 597 bp

>NTDB_id=164489 AVM03_RS10725 WP_003151513.1 2266140..2266736(+) (clpP) [Bacillus amyloliquefaciens strain MBE1283]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGAGAAAGAGCTTATGACATTTACTCCCGTCTTTTGAAGGA
CCGTATTATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCCTTGAAGCGG
AAGACCCTGAAAAAGATATTTCCATTTACATTAACAGCCCTGGCGGATCAATCACTGCCGGTATGGCAATCTATGATACA
ATGCAGTTCATTAAACCGAAAGTATCCACGATCTGCATCGGTATGGCCGCTTCTATGGGAGCATTTTTACTTGCAGCCGG
AGAAAAAGGCAAACGTTACGCGCTTCCTAACAGTGAAGTTATGATTCACCAGCCGCTTGGCGGAGCGCAAGGACAGGCGA
CAGAAATTGAAATCGCCGCAAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTGCTTGCTGAACGTACCGGCCAG
CCGCTTGAAGTCATTGAGCGCGATACAGACCGCGACAACTTCAAATCAGCTGATGAAGCTTTAGAATACGGCTTAATCGA
TAAAGTGCTGACACGCAATACGGAAGACCAGAAGTAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (13-192)

3D structure

• AlphaFold DB: I2CAH7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	95.96	100	0.96
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.586	96.465	0.662
clpP	Streptococcus thermophilus LMG 18311	58.549	97.475	0.571
clpP	Streptococcus thermophilus LMD-9	58.549	97.475	0.571
clpP	Streptococcus pneumoniae D39	57.216	97.98	0.561
clpP	Streptococcus pneumoniae Rx1	57.216	97.98	0.561
clpP	Streptococcus pneumoniae R6	57.216	97.98	0.561
clpP	Streptococcus pneumoniae TIGR4	57.216	97.98	0.561
clpP	Lactococcus lactis subsp. cremoris KW2	56.701	97.98	0.556
clpP	Streptococcus pyogenes JRS4	55.44	97.475	0.54
clpP	Streptococcus pyogenes MGAS315	55.44	97.475	0.54
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.639	97.98	0.535
clpP	Streptococcus mutans UA159	54.639	97.98	0.535