Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AUR58_RS01455 Genome accession   NZ_CP013667
Coordinates   250505..251431 (+) Length   308 a.a.
NCBI ID   WP_040953450.1    Uniprot ID   -
Organism   Coxiella burnetii strain 3262     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 249379..250398 250505..251431 flank 107


Gene organization within MGE regions


Location: 249379..251431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUR58_RS01450 (AUR58_01660) - 249379..250398 (-) 1020 WP_046036886.1 IS110-like element IS1111A family transposase -
  AUR58_RS01455 (AUR58_01665) dprA 250505..251431 (+) 927 WP_040953450.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 33093.35 Da        Isoelectric Point: 7.8929

>NTDB_id=163732 AUR58_RS01455 WP_040953450.1 250505..251431(+) (dprA) [Coxiella burnetii strain 3262]
MQPPFNALLFFAMPNSQLDPEWTTAPNHHILTLDHPSYPTLLKEIPDPPKKLYIMGDPLILNQPQFAIVGSRNPTVTGCE
IAQEMAEKLVQAGFHITSGLALGIDAASHRGALKAGGQTIAVLGSGLTNIYPRRHHRLAEQISQKGALVSEFPLTMPPLP
TNFPRRNRIIIGLSLGTLVVEATLGSGSLITAKLAAEQNREVFAIPGSIRNPLSQGCHSLIKEGAKLVDSIGDIIAELSY
EATGASAPIQALDKNEHKLLECIGFEVTSIDQLIARSGFSASIVASLLLRIELQGYIKSRPGGVIRVK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=163732 AUR58_RS01455 WP_040953450.1 250505..251431(+) (dprA) [Coxiella burnetii strain 3262]
TTGCAACCTCCCTTCAATGCACTATTATTTTTCGCCATGCCAAATTCTCAATTAGACCCAGAATGGACGACAGCGCCGAA
CCACCATATTTTGACGCTCGATCATCCCTCCTACCCTACTTTATTGAAGGAAATCCCCGATCCGCCCAAAAAGCTCTACA
TCATGGGTGACCCTTTGATATTAAATCAGCCGCAATTTGCCATCGTCGGCAGCCGTAATCCAACCGTCACCGGCTGCGAA
ATCGCACAAGAAATGGCAGAGAAACTCGTTCAAGCTGGTTTTCACATCACCAGCGGCCTTGCACTTGGCATCGATGCCGC
AAGTCACCGCGGGGCTTTAAAAGCAGGAGGCCAAACCATAGCCGTACTCGGCAGCGGCTTAACTAACATATATCCTCGAC
GCCACCACCGTCTGGCGGAACAAATTTCCCAAAAAGGCGCCCTCGTCTCAGAATTCCCGCTAACCATGCCGCCACTCCCC
ACCAACTTCCCTCGCCGCAACCGCATCATCATCGGATTAAGCCTCGGTACGCTCGTGGTGGAAGCTACCCTTGGCTCAGG
CTCTCTGATCACCGCGAAATTAGCCGCCGAACAAAACCGGGAAGTTTTCGCCATCCCGGGTTCAATCCGAAACCCTCTTT
CTCAGGGATGCCATTCTCTCATCAAAGAGGGCGCTAAACTGGTTGATTCTATAGGGGATATTATTGCAGAATTGAGTTAT
GAGGCTACGGGCGCTAGCGCCCCGATTCAAGCACTTGATAAGAATGAACACAAACTGTTAGAGTGCATCGGATTTGAGGT
CACTTCCATTGATCAACTGATCGCTCGAAGTGGCTTTTCGGCTTCCATCGTAGCTTCGTTATTGTTAAGGATAGAATTGC
AAGGCTACATTAAATCAAGACCTGGCGGTGTTATACGAGTGAAGTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(245-303)

DNA recombination-mediator protein A (DNA_processg_A)

(25-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Legionella pneumophila strain ERS1305867

54.266

95.13

0.516
  dprA Vibrio cholerae strain A1552

48.829

97.078

0.474
  dprA Vibrio campbellii strain DS40M4

47.386

99.351

0.471
  dprA Glaesserella parasuis strain SC1401

44.951

99.675

0.448
  dprA Acinetobacter baumannii D1279779

44.369

95.13

0.422
  dprA Acinetobacter baumannii strain A118

43.878

95.455

0.419
  dprA Acinetobacter baylyi ADP1

42.712

95.779

0.409
  dprA Haemophilus influenzae Rd KW20

55.046

70.779

0.39

Multiple sequence alignment