Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ATM98_RS08720 Genome accession   NZ_CP013651
Coordinates   1797068..1799053 (+) Length   661 a.a.
NCBI ID   WP_061564750.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1792068..1804053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS08705 (ATM98_08710) - 1792863..1793435 (+) 573 WP_061564747.1 hypothetical protein -
  ATM98_RS08710 (ATM98_08715) pbp3 1793500..1794738 (-) 1239 WP_185759950.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ATM98_RS08715 (ATM98_08720) amiA3 1794923..1796887 (+) 1965 WP_061564749.1 peptide ABC transporter substrate-binding protein Regulator
  ATM98_RS08720 (ATM98_08725) amiA3 1797068..1799053 (+) 1986 WP_061564750.1 peptide ABC transporter substrate-binding protein Regulator
  ATM98_RS08725 (ATM98_08730) amiC 1799118..1800617 (+) 1500 WP_048692006.1 ABC transporter permease Regulator
  ATM98_RS08730 (ATM98_08735) amiD 1800617..1801543 (+) 927 WP_048692005.1 oligopeptide ABC transporter permease OppC Regulator
  ATM98_RS08735 (ATM98_08740) amiE 1801555..1802622 (+) 1068 WP_061564751.1 ABC transporter ATP-binding protein Regulator
  ATM98_RS08740 (ATM98_08745) amiF 1802632..1803555 (+) 924 WP_048714745.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 73038.94 Da        Isoelectric Point: 4.8258

>NTDB_id=163435 ATM98_RS08720 WP_061564750.1 1797068..1799053(+) (amiA3) [Streptococcus sp. A12]
MKKSKVFAFAGVTLLAATFLAACSGSKDSKSASKKDTTYGYVYTDDPTTLDYTVSSKASVHDITTNGVDGLLENDKYGNL
VPSIAEDWSVSKDGLTYTYKIRKGVKWYDADGEEHGEVTAHDFVTGLKHAADKKSESLPLVKDSIKGLKDYSEGKISDFS
EVGVKAVDDYTLEYTLNQPETFWNSKTTNGVLFPISTDFLKSKGDEFGQPGNVKSILFNGPFLLKSITSKSEITFEKNEE
YWDKDNVHIDKIKFSYYDGSDQDSLARGFSDGSYSQARLFPASSNFASVEEKYKDNIYNTQPGSGVAVLGFNIDRQAYNH
TSKTSDDQKSSTKKAILNKNFRQAITFALNRENYSAQVNGKDYAKAAIRNMYTAPAFVQVNGKDFGDVVADKLQTYGDQW
SGVNLADGQNGLYSKEKAKAQFEKAKAELQKEGVQFPIHLDVPVAQNSTNFVSRMQSFKQSVEETLGTENVVVDLQMMDQ
DEVLNITLNVPSAAETDWDLQGLVGWNPDYDDPSTYLDTLQPSSPDQTKTYLGFAGGVDNASAKAVGLDEYAKLLDDAEK
ETLDVVTRYDKFAAAQAWLTDSALVIPTMTSAGASTVVSKVVPFSGPSSQTGNKGSTYFKYVEVQDEPVTKKQYDQEREK
WLKEKADSNKKAQQELEKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=163435 ATM98_RS08720 WP_061564750.1 1797068..1799053(+) (amiA3) [Streptococcus sp. A12]
ATGAAAAAAAGTAAAGTTTTTGCATTTGCCGGAGTAACATTGCTCGCAGCAACTTTCCTTGCAGCATGTTCTGGCTCAAA
AGATAGCAAGTCTGCATCAAAAAAAGATACAACATATGGCTATGTTTATACAGATGATCCAACAACTTTGGATTACACTG
TATCTTCAAAAGCTTCCGTACACGATATTACAACAAACGGTGTAGATGGTTTGTTGGAGAACGACAAATACGGAAACCTT
GTACCATCTATTGCTGAAGATTGGTCTGTTTCAAAAGACGGTTTGACTTATACTTACAAAATCCGTAAGGGTGTTAAATG
GTATGATGCTGACGGTGAAGAGCATGGTGAAGTAACAGCTCATGACTTTGTTACTGGATTGAAGCATGCGGCGGATAAAA
AATCAGAATCTCTTCCATTGGTAAAAGACTCAATCAAAGGATTGAAAGACTACTCAGAAGGAAAAATTTCAGATTTCTCT
GAGGTTGGAGTCAAAGCAGTGGATGACTATACTCTTGAGTATACTTTGAACCAACCAGAAACTTTCTGGAATTCAAAAAC
AACTAATGGTGTTCTTTTCCCAATTAGTACAGATTTCTTGAAGAGCAAGGGTGATGAATTTGGTCAGCCAGGTAATGTTA
AATCAATCTTGTTCAATGGTCCATTCCTTTTGAAATCAATCACTTCTAAATCAGAAATCACTTTTGAAAAGAATGAAGAG
TATTGGGATAAAGACAACGTTCATATCGACAAGATCAAATTCTCTTATTATGATGGATCAGACCAAGATTCATTGGCGCG
TGGCTTTAGCGACGGTTCATATTCCCAAGCTCGTCTATTCCCTGCTAGCTCTAACTTTGCGTCTGTTGAAGAAAAATACA
AAGATAATATCTACAACACACAGCCTGGTTCTGGTGTAGCAGTCTTAGGTTTCAACATTGACCGTCAAGCCTACAACCAT
ACTTCTAAGACGTCAGATGACCAGAAATCTTCTACTAAGAAAGCTATCTTAAACAAGAATTTCCGTCAAGCGATCACCTT
TGCCTTGAACCGTGAGAATTATTCAGCACAAGTCAATGGTAAAGACTATGCTAAGGCTGCTATTCGGAATATGTACACTG
CACCTGCCTTTGTTCAAGTAAACGGTAAAGACTTTGGTGATGTAGTAGCAGACAAGTTGCAAACATATGGAGATCAATGG
AGCGGTGTGAATCTTGCGGACGGTCAAAACGGCCTCTATAGCAAGGAAAAAGCAAAAGCTCAATTTGAAAAAGCAAAAGC
TGAACTCCAAAAAGAAGGTGTTCAATTCCCAATCCACTTGGATGTTCCAGTTGCACAAAACTCAACAAACTTTGTGTCAC
GGATGCAATCCTTCAAACAATCAGTTGAAGAAACACTTGGCACAGAAAACGTTGTTGTGGACCTTCAAATGATGGACCAA
GATGAAGTCTTGAACATTACATTGAACGTACCATCAGCTGCAGAAACTGACTGGGATCTTCAAGGGCTTGTAGGATGGAA
TCCAGACTACGATGACCCATCTACTTACCTTGATACCTTGCAACCATCTTCACCAGACCAAACTAAGACTTACCTTGGAT
TTGCTGGTGGTGTCGACAATGCTTCTGCTAAAGCAGTTGGCTTAGATGAATATGCGAAGTTGCTTGATGATGCAGAAAAA
GAAACCCTAGACGTAGTAACACGTTACGACAAATTTGCAGCAGCGCAAGCTTGGTTAACAGATAGCGCATTAGTGATTCC
AACTATGACTAGCGCTGGAGCATCTACAGTTGTTTCAAAAGTAGTTCCATTCTCTGGACCTTCATCACAAACAGGTAACA
AAGGATCAACTTATTTCAAATATGTTGAAGTTCAAGATGAACCTGTCACTAAAAAACAATATGATCAAGAACGTGAAAAA
TGGTTGAAAGAAAAAGCTGATTCAAATAAGAAAGCTCAGCAAGAACTAGAAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(80-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.578

100

0.598
  amiA3 Streptococcus thermophilus LMG 18311

59.125

100

0.593
  amiA Streptococcus salivarius strain HSISS4

58.761

100

0.588

Multiple sequence alignment