Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   ATM98_RS08735 Genome accession   NZ_CP013651
Coordinates   1801555..1802622 (+) Length   355 a.a.
NCBI ID   WP_061564751.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1796555..1807622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS08720 (ATM98_08725) amiA3 1797068..1799053 (+) 1986 WP_061564750.1 peptide ABC transporter substrate-binding protein Regulator
  ATM98_RS08725 (ATM98_08730) amiC 1799118..1800617 (+) 1500 WP_048692006.1 ABC transporter permease Regulator
  ATM98_RS08730 (ATM98_08735) amiD 1800617..1801543 (+) 927 WP_048692005.1 oligopeptide ABC transporter permease OppC Regulator
  ATM98_RS08735 (ATM98_08740) amiE 1801555..1802622 (+) 1068 WP_061564751.1 ABC transporter ATP-binding protein Regulator
  ATM98_RS08740 (ATM98_08745) amiF 1802632..1803555 (+) 924 WP_048714745.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39719.31 Da        Isoelectric Point: 4.6965

>NTDB_id=163438 ATM98_RS08735 WP_061564751.1 1801555..1802622(+) (amiE) [Streptococcus sp. A12]
MTNDKNVILSARDIVVEFDVRDRVLTAIRNVSLDLVEGEVMALVGESGSGKSVLTKTFTGMLEENGRIANGNINYRGQEL
TELKSNKDWEDIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKSAKEAREMAIDYMEKVGIPEAERRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQKEYNFTTIFITHDLGVVASIADKVAVMYAGEIVE
FGKVEEIFYDPRHPYTWSLLSSLPQLSTSKGDLYSIPGTPPSLYSPVKGDAFALRSDYAMQIDFEEHPPVFNVSDTHWAK
TWLLHEDAPKVNKPEIIDNLHEKISAKMGFTTIKD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=163438 ATM98_RS08735 WP_061564751.1 1801555..1802622(+) (amiE) [Streptococcus sp. A12]
ATGACAAATGATAAAAATGTAATCTTATCTGCTCGCGATATCGTAGTAGAATTTGATGTTCGGGATCGTGTCTTAACAGC
CATTCGCAATGTGTCCTTAGACCTTGTTGAAGGTGAAGTCATGGCACTTGTTGGTGAATCAGGTTCTGGTAAATCTGTTC
TGACAAAAACCTTCACAGGAATGTTAGAAGAAAACGGACGAATTGCCAATGGTAACATTAATTACCGTGGGCAAGAATTA
ACAGAACTCAAGTCAAACAAGGACTGGGAAGATATCCGCGGTGCAAAAATTGCAACCATCTTCCAAGATCCAATGACCAG
TTTGGACCCGATTAATACAATCGGATCACAAATTACGGAAGTTATTATTAAACACCAAGGCAAGAGTGCCAAAGAAGCCA
GAGAAATGGCCATTGATTATATGGAAAAGGTGGGAATCCCAGAAGCGGAACGTCGTTTTGATGAATATCCTTTCCAATAT
TCAGGCGGGATGCGTCAACGGATCGTTATTGCTATTGCGCTTGCTTGTCGTCCGGATATCTTGATCTGTGACGAGCCAAC
AACGGCCCTTGACGTAACCATCCAAGCCCAGATCATTGACTTGTTGAAATCATTGCAAAAAGAATATAACTTTACAACAA
TCTTTATTACCCACGACTTAGGTGTAGTCGCAAGTATTGCAGATAAGGTTGCTGTAATGTATGCTGGTGAAATTGTAGAA
TTTGGTAAAGTAGAAGAAATCTTCTACGATCCAAGACATCCTTATACATGGAGTCTCCTTTCAAGTTTGCCACAATTGTC
TACCTCTAAAGGTGATTTATATTCTATCCCAGGGACTCCTCCATCATTATATTCACCAGTAAAAGGGGATGCCTTTGCTT
TGCGTTCAGACTATGCTATGCAAATTGATTTCGAGGAACATCCACCAGTCTTCAATGTTTCAGATACACATTGGGCTAAA
ACATGGCTCTTACATGAAGATGCACCAAAAGTCAATAAACCAGAAATTATTGATAATCTTCATGAAAAGATCAGTGCAAA
AATGGGATTCACTACAATCAAGGACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

84.225

100

0.842
  amiE Streptococcus thermophilus LMG 18311

82.535

100

0.825
  amiE Streptococcus thermophilus LMD-9

82.535

100

0.825
  oppD Streptococcus mutans UA159

56.232

97.183

0.546

Multiple sequence alignment