Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ATM98_RS08715 Genome accession   NZ_CP013651
Coordinates   1794923..1796887 (+) Length   654 a.a.
NCBI ID   WP_061564749.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1789923..1801887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS08695 (ATM98_08700) - 1790851..1791285 (+) 435 WP_061564745.1 SUF system NifU family Fe-S cluster assembly protein -
  ATM98_RS08700 (ATM98_08705) sufB 1791430..1792842 (+) 1413 WP_061564746.1 Fe-S cluster assembly protein SufB -
  ATM98_RS08705 (ATM98_08710) - 1792863..1793435 (+) 573 WP_061564747.1 hypothetical protein -
  ATM98_RS08710 (ATM98_08715) pbp3 1793500..1794738 (-) 1239 WP_185759950.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ATM98_RS08715 (ATM98_08720) amiA3 1794923..1796887 (+) 1965 WP_061564749.1 peptide ABC transporter substrate-binding protein Regulator
  ATM98_RS08720 (ATM98_08725) amiA3 1797068..1799053 (+) 1986 WP_061564750.1 peptide ABC transporter substrate-binding protein Regulator
  ATM98_RS08725 (ATM98_08730) amiC 1799118..1800617 (+) 1500 WP_048692006.1 ABC transporter permease Regulator
  ATM98_RS08730 (ATM98_08735) amiD 1800617..1801543 (+) 927 WP_048692005.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72597.53 Da        Isoelectric Point: 4.8006

>NTDB_id=163434 ATM98_RS08715 WP_061564749.1 1794923..1796887(+) (amiA3) [Streptococcus sp. A12]
MKVNKRFVLAGVSLASALLLTACGGGSSNQSTYSYIYSTDPNTLDYIASTRTTTSDITSNLVDGLLENDKYGNLIPSLAE
DWTVSEDGLVYTYKLRKDAKWYTSEGEEYGAVTAHDFVTGIKHAVESKSEGLFLIQNSIKGLDAYAKGETTDFKTVGVKA
LDDYTVQYTLERPESFWNSKTTSGVLFPVNAAFLESQGKDFGSLKPSSILYNGPYYLKNLTSKSQIELVKNKEYYDEKNV
HIDNVKLTYNDGSDPESVIKKFENGQYSFATVMPNSSTYKSVKKKFGDNIVYGVQYGTSYYLGFNIDRQKYNHTAKTTDA
QKSSTKQAILNKDFRQAVNFAFDREAYAAQTSGADAATKILRNTLVPPTFVQVNGEEFGKVVEKQLVTYGDEWKDVNLDD
AQTTLYNQEKAKAEFAKAKEQLQKEGVQFPIHLDYVVSQTDNSQVQQASSFKQSVEAVLGADNVVVDIQKLSDDDFNNIT
YFTDTAAEKDYDLAGGGWVPDYQDPSTYLESLSPVNGSVFYYLGVDAGSNSPSITAVDFGKYAELLKDANAEVSDQAVRY
EKYAAAQAWLTDSSLILPTVSNGGTPMLQRTVPYSRAASWVGTKGTGTNYKYLELSEEVIKTKDYDASKEKWLKEKAESN
KKAQEELKNHIESK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=163434 ATM98_RS08715 WP_061564749.1 1794923..1796887(+) (amiA3) [Streptococcus sp. A12]
ATGAAAGTAAATAAACGGTTTGTACTGGCCGGTGTTTCTCTAGCCAGCGCTCTTCTATTAACAGCATGCGGTGGTGGAAG
CAGCAATCAATCTACTTATTCTTATATTTATTCAACGGATCCAAATACTTTGGACTACATTGCATCGACTCGTACAACGA
CGTCTGATATTACAAGTAACCTTGTTGATGGTTTGTTAGAAAATGATAAATATGGAAATTTAATCCCAAGTTTGGCAGAA
GACTGGACAGTTTCAGAAGATGGCTTGGTCTATACCTATAAACTTCGAAAAGATGCTAAATGGTACACCAGTGAAGGGGA
AGAATATGGTGCTGTAACAGCTCACGATTTTGTGACAGGAATCAAACATGCTGTGGAATCAAAATCTGAAGGTCTCTTCT
TAATCCAAAACTCCATTAAAGGCTTGGATGCCTATGCCAAGGGTGAAACAACAGATTTTAAGACAGTTGGCGTGAAAGCC
TTAGATGATTACACCGTTCAATATACCTTGGAACGCCCAGAAAGCTTTTGGAATTCTAAGACGACATCAGGCGTCCTTTT
CCCAGTTAACGCAGCTTTCTTAGAATCTCAAGGAAAAGACTTTGGTTCTTTAAAACCAAGTAGTATTCTCTATAACGGTC
CCTATTATTTGAAGAATTTAACTTCAAAATCTCAAATTGAACTTGTAAAAAATAAAGAATACTATGATGAAAAGAATGTT
CATATTGATAATGTGAAGTTGACTTACAATGACGGATCAGATCCAGAATCAGTCATCAAGAAATTTGAGAATGGACAATA
TTCATTTGCGACGGTAATGCCAAATAGCTCCACTTATAAGAGTGTGAAAAAGAAATTTGGTGATAATATTGTTTATGGTG
TTCAATATGGTACATCTTACTATCTAGGCTTCAACATCGATCGTCAGAAGTATAATCATACAGCCAAAACGACAGATGCT
CAAAAATCGTCTACAAAACAAGCGATTTTAAACAAGGATTTCCGTCAAGCCGTCAACTTTGCCTTTGACCGTGAAGCCTA
TGCAGCTCAAACATCTGGTGCGGATGCGGCGACCAAGATTCTTCGAAACACCTTGGTTCCACCGACTTTTGTTCAAGTAA
ATGGTGAAGAGTTCGGTAAGGTTGTTGAGAAACAATTGGTGACCTATGGGGATGAGTGGAAAGACGTAAATCTAGATGAT
GCCCAAACCACTCTCTACAATCAAGAAAAAGCCAAGGCTGAATTTGCAAAAGCCAAAGAACAACTACAAAAAGAAGGGGT
ACAATTCCCAATTCATTTGGATTACGTTGTTAGTCAGACAGATAACAGTCAGGTACAACAAGCTAGCTCCTTCAAACAAT
CCGTAGAAGCTGTTCTTGGTGCAGACAATGTTGTCGTAGATATTCAGAAATTATCTGATGATGACTTTAACAATATTACC
TACTTCACAGATACTGCTGCTGAGAAAGATTATGATCTTGCAGGCGGAGGATGGGTGCCAGACTACCAAGATCCATCTAC
TTATTTAGAGAGTTTAAGTCCTGTTAACGGTTCGGTTTTCTACTATCTAGGTGTGGATGCAGGTTCAAACAGCCCTTCTA
TTACAGCAGTTGACTTTGGGAAGTATGCAGAGCTCTTAAAAGATGCCAATGCAGAAGTGAGTGACCAAGCTGTACGGTAT
GAGAAATACGCAGCCGCTCAAGCATGGCTAACCGATAGTTCGTTGATCTTACCAACTGTTTCAAATGGTGGAACGCCAAT
GTTGCAACGGACTGTCCCATATAGTCGTGCTGCTTCATGGGTTGGAACAAAAGGTACAGGAACCAACTATAAATATCTTG
AACTTTCAGAAGAAGTCATCAAGACAAAGGATTACGATGCAAGTAAAGAAAAATGGTTGAAAGAAAAGGCTGAATCCAAT
AAAAAAGCCCAAGAAGAATTAAAGAACCACATCGAATCTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.788

100

0.543
  amiA3 Streptococcus thermophilus LMG 18311

53.333

100

0.538
  amiA Streptococcus salivarius strain HSISS4

52.959

100

0.534

Multiple sequence alignment