Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ATM98_RS04465 Genome accession   NZ_CP013651
Coordinates   908891..909481 (-) Length   196 a.a.
NCBI ID   WP_061564231.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 903891..914481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS04440 (ATM98_04445) - 904557..905321 (-) 765 WP_048689704.1 ABC transporter ATP-binding protein -
  ATM98_RS04445 (ATM98_04450) - 905321..906268 (-) 948 WP_003008278.1 branched-chain amino acid ABC transporter permease -
  ATM98_RS04450 (ATM98_04455) - 906272..907141 (-) 870 WP_061564230.1 branched-chain amino acid ABC transporter permease -
  ATM98_RS04455 (ATM98_04460) - 907223..908380 (-) 1158 WP_006595827.1 ABC transporter substrate-binding protein -
  ATM98_RS04460 (ATM98_04465) - 908475..908759 (-) 285 WP_048689712.1 DUF2129 domain-containing protein -
  ATM98_RS04465 (ATM98_04470) clpP 908891..909481 (-) 591 WP_061564231.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ATM98_RS04470 (ATM98_04475) upp 909644..910273 (-) 630 WP_048689715.1 uracil phosphoribosyltransferase -
  ATM98_RS04475 (ATM98_04480) mgtA 910374..913034 (-) 2661 WP_061564232.1 magnesium-translocating P-type ATPase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21447.59 Da        Isoelectric Point: 5.0054

>NTDB_id=163405 ATM98_RS04465 WP_061564231.1 908891..909481(-) (clpP) [Streptococcus sp. A12]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYMYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAENSGQ
TIKKIHADAERDNWMTAEETLAYGFIDEIMANNNLG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=163405 ATM98_RS04465 WP_061564231.1 908891..909481(-) (clpP) [Streptococcus sp. A12]
ATGATTCCAGTAGTAATTGAACAAACTAGTCGTGGCGAACGCTCATACGACATATACTCACGCCTCTTAAAAGACCGTAT
TATCATGGTGACAGGACCGGTAGAAGACCAAATGGCCAATTCGATTATTGCCCAATTACTCTTCTTGGATGCCCAAGATA
ATACCAAAGATATCTATATGTATGTCAATACGCCAGGAGGCTCTGTCTCTGCAGGTTTGGCAATCGTCGATACCATGAAC
TTTATCAAATCAGACGTCCAAACCATCGTCATGGGGATGGCAGCTTCAATGGGGACTGTGATTGCATCAAGTGGTGCCAA
AGGCAAACGCTTCATGTTGCCAAATGCTGAGTACATGATCCACCAACCAATGGGTGGTACTGGTGGCGGTACTCAACAAA
CGGATATGGCCATTGCAGCAGAACACCTCTTGAAAACACGTCACAGATTGGAAAAAATCTTGGCAGAAAATTCAGGTCAA
ACCATCAAGAAAATCCACGCTGATGCAGAACGGGATAATTGGATGACTGCAGAAGAAACCTTAGCTTATGGTTTCATCGA
TGAAATCATGGCTAACAACAATCTCGGATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes JRS4

92.308

99.49

0.918
  clpP Streptococcus pyogenes MGAS315

92.308

99.49

0.918
  clpP Streptococcus pneumoniae Rx1

91.795

99.49

0.913
  clpP Streptococcus pneumoniae D39

91.795

99.49

0.913
  clpP Streptococcus pneumoniae R6

91.795

99.49

0.913
  clpP Streptococcus pneumoniae TIGR4

91.795

99.49

0.913
  clpP Streptococcus thermophilus LMG 18311

90.256

99.49

0.898
  clpP Streptococcus thermophilus LMD-9

90.256

99.49

0.898
  clpP Streptococcus mutans UA159

88.205

99.49

0.878
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

84.615

99.49

0.842
  clpP Lactococcus lactis subsp. cremoris KW2

84.103

99.49

0.837
  clpP Bacillus subtilis subsp. subtilis str. 168

57.292

97.959

0.561
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.477

98.469

0.556

Multiple sequence alignment